MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.1 nTPM
HPA:52.1 nTPM
GTEx:69.3 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:42.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.3
2019 Male, age 18, unknown 52.3
2411 Female, age 72, unknown 51.6
1827 Male, age 72, unknown 50.4
2828 Female, age 72, unknown 49.5
1830 Male, age 51, unknown 47.7
1833 Male, age 53, unknown 47.6
2219 Male, age 76, both hemispheres 47.6
1870 Female, age 42, unknown 46.6
2586 Male, age 75, left hemisphere 46.6
2666 Male, age 74, left hemisphere 43.7
Dorsal raphe nucleus
nTPM: 50.2
2298 Female, age 72, unknown 55.3
2750 Male, age 76, both hemispheres 50.1
2047 Male, age 72, unknown 50.0
1828 Male, age 53, unknown 49.7
2016 Female, age 72, unknown 45.8
Inferior colliculus
nTPM: 47.6
2097 Female, age 72, unknown 52.3
1890 Male, age 53, unknown 47.3
1848 Female, age 42, unknown 47.2
2849 Male, age 72, unknown 43.7
Median raphe nucleus
nTPM: 52.1
2220 Male, age 76, midline 52.1
Pedunculopontine tegmental nucleus
nTPM: 48.5
1921 Female, age 85, both hemispheres 50.8
2334 Male, age 80, both hemispheres 50.3
2338 Male, age 61, both hemispheres 44.5
Periaquaductal grey, anterior
nTPM: 50.2
1795 Male, age 51, unknown 52.1
2502 Female, age 75, unknown 49.6
1947 Male, age 18, unknown 48.9
Periaquaductal grey, dorsal
nTPM: 46.4
1840 Male, age 53, unknown 46.6
2464 Female, age 72, unknown 46.3
2850 Male, age 76, both hemispheres 46.3
1831 Male, age 72, unknown 46.2
Periaquaductal grey, lateral
nTPM: 48.4
2272 Male, age 74, both hemispheres 50.8
2140 Male, age 76, both hemispheres 47.9
2053 Male, age 18, unknown 46.6
Pretectal area
nTPM: 51.5
2007 Male, age 72, unknown 57.8
1944 Female, age 72, unknown 54.7
1816 Male, age 51, unknown 53.9
1817 Female, age 42, unknown 53.3
2273 Male, age 74, both hemispheres 51.6
2667 Female, age 75, unknown 51.4
2224 Female, age 72, unknown 51.0
1815 Male, age 53, unknown 49.8
2316 Male, age 76, right hemisphere 49.6
2407 Male, age 75, both hemispheres 47.4
2825 Male, age 18, unknown 45.7
Red nucleus
nTPM: 48.5
2503 Female, age 72, unknown 51.5
2785 Male, age 18, unknown 51.3
2725 Female, age 75, unknown 49.6
1821 Female, age 72, unknown 48.9
2588 Male, age 74, left hemisphere 48.9
2769 Male, age 72, unknown 48.6
2227 Male, age 72, unknown 48.4
1954 Female, age 42, unknown 48.2
2584 Male, age 75, left hemisphere 47.8
2823 Male, age 76, right hemisphere 46.8
1904 Male, age 53, unknown 46.4
1865 Male, age 51, unknown 45.5
Substantia nigra
nTPM: 50.4
1916 Female, age 42, unknown 57.1
1851 Male, age 51, unknown 54.8
1941 Male, age 53, unknown 53.0
1889 Female, age 72, unknown 52.5
2241 Male, age 72, unknown 48.9
2590 Female, age 75, unknown 48.5
2583 Male, age 75, right hemisphere 48.4
2699 Male, age 18, unknown 48.2
2409 Female, age 72, unknown 47.7
2665 Male, age 74, both hemispheres 44.9
Superior colliculus
nTPM: 48.4
2261 Male, age 18, unknown 52.6
1796 Male, age 53, unknown 52.1
2087 Female, age 72, unknown 52.0
2668 Female, age 75, unknown 49.0
1895 Male, age 76, right hemisphere 48.5
1913 Female, age 42, unknown 47.8
1995 Male, age 72, unknown 46.7
1839 Male, age 51, unknown 46.4
2664 Male, age 75, both hemispheres 44.7
2587 Male, age 74, left hemisphere 44.5
Ventral tegmental area
nTPM: 51.2
2410 Female, age 72, unknown 58.2
2218 Male, age 76, both hemispheres 51.9
1915 Female, age 42, unknown 51.8
2021 Male, age 53, unknown 48.8
1942 Male, age 51, unknown 48.5
2223 Female, age 72, unknown 48.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.3
Samples: 139

Max nTPM: 135.4
Min nTPM: 24.7
Std nTPM: 18.8
Median nTPM: 65.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 135.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 119.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 114.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 114.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 109.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 104.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 104.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 102.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 102.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 101.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.1
Pig sample Sample description nTPM
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 8.7
Sample A Female 12.6
Sample B Female 10.3
Sample C Male 10.8
Sample D Male 8.7
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 9.2
Min nTPM: 6.3
Sample B Female 7.2
Sample C Male 9.2
Sample D Male 6.3
Substantia nigra
nTPM: 10.4
Samples: 4

Max nTPM: 15.9
Min nTPM: 6.8
Sample A Female 15.9
Sample B Female 8.7
Sample C Male 10.2
Sample D Male 6.8
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.8
Sample A Female 13.8
Sample B Female 12.4
Sample C Male 10.3
Sample D Male 7.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 48.5
Min nTPM: 36.3
Sample A Male 48.5
Sample B Male 36.3
Sample C Female 38.6
Sample D Female 44.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68545477 Antisense, RP_050120_01_A06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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