BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:54.3 nTPM
HPA:54.3 nTPM
GTEx:60.8 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:35.6 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053162
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.3
1857 Female, age 85, left hemisphere 57.5
2481 Female, age 94, left hemisphere 56.1
1854 Male, age 80, left hemisphere 55.7
2846 Female, age 79, unknown 55.2
2290 Female, age 72, unknown 54.6
2288 Male, age 75, left hemisphere 52.2
1781 Male, age 74, unknown 52.0
2289 Male, age 61, right hemisphere 51.1
Claustrum
nTPM: 50.0
2196 Female, age 79, unknown 52.1
2198 Male, age 80, both hemispheres 51.8
2392 Female, age 94, both hemispheres 51.0
1956 Male, age 74, unknown 50.2
2491 Male, age 75, both hemispheres 50.2
2284 Female, age 91, both hemispheres 49.7
2292 Female, age 85, both hemispheres 48.4
2645 Female, age 72, unknown 48.4
2568 Male, age 61, both hemispheres 48.1
Globus pallidus, externus
nTPM: 52.7
2772 Female, age 79, unknown 57.4
1996 Male, age 80, right hemisphere 56.3
2395 Male, age 75, both hemispheres 52.3
2567 Female, age 72, unknown 49.1
2646 Male, age 61, right hemisphere 48.4
Globus pallidus, internus
nTPM: 52.3
1818 Male, age 74, unknown 55.6
2287 Male, age 75, right hemisphere 54.0
2778 Female, age 91, both hemispheres 53.1
2037 Male, age 80, right hemisphere 52.7
2483 Female, age 94, right hemisphere 52.4
2566 Female, age 72, unknown 49.6
2111 Female, age 85, right hemisphere 48.6
Nucleus accumbens
nTPM: 54.3
1856 Female, age 91, right hemisphere 59.9
1783 Male, age 74, unknown 55.1
2286 Male, age 75, left hemisphere 54.1
1806 Female, age 85, left hemisphere 54.0
2824 Male, age 61, right hemisphere 53.8
2698 Female, age 72, unknown 53.4
2391 Female, age 94, left hemisphere 53.0
2732 Male, age 80, right hemisphere 51.1
Nucleus basalis of Meynert
nTPM: 52.1
2393 Male, age 80, right hemisphere 54.3
2484 Female, age 94, left hemisphere 51.8
2569 Male, age 61, both hemispheres 51.1
2821 Male, age 75, both hemispheres 51.1
Nucleus of the diagonal band
nTPM: 52.3
2775 Male, age 80, right hemisphere 54.7
1812 Female, age 91, both hemispheres 54.0
2195 Female, age 85, both hemispheres 52.2
2029 Male, age 61, right hemisphere 50.7
1979 Male, age 74, unknown 49.8
Olfactory tubercle
nTPM: 52.0
1846 Male, age 80, right hemisphere 52.7
1998 Female, age 91, both hemispheres 52.7
2856 Male, age 75, right hemisphere 52.1
2487 Female, age 94, left hemisphere 50.3
Putamen
nTPM: 54.0
2466 Female, age 79, unknown 57.0
1937 Female, age 91, right hemisphere 56.5
1838 Male, age 80, right hemisphere 55.8
2482 Female, age 94, left hemisphere 54.7
1829 Male, age 74, unknown 53.5
2489 Female, age 72, unknown 50.3
2647 Male, age 75, left hemisphere 50.1
Septal nuclei
nTPM: 51.0
1960 Male, age 74, unknown 52.3
2031 Female, age 72, unknown 52.2
2199 Male, age 80, right hemisphere 51.6
2629 Female, age 94, right hemisphere 51.6
2009 Female, age 91, both hemispheres 51.1
2394 Male, age 61, left hemisphere 50.6
2059 Female, age 85, both hemispheres 47.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.2
Samples: 246

Max nTPM: 152.5
Min nTPM: 24.3
Std nTPM: 17.6
Median nTPM: 52.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 152.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 135.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 123.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 122.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 117.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 111.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 111.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 106.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 98.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 98.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 88.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.6
Samples: 246

Max nTPM: 141.6
Min nTPM: 25.3
Std nTPM: 15.1
Median nTPM: 56.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 141.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 112.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 111.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 102.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 96.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 95.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 94.7
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 93.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 91.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 90.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 86.8
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Brain - Putamen (basal ganglia)
Average nTPM: 60.8
Samples: 205

Max nTPM: 137.8
Min nTPM: 22.8
Std nTPM: 16.1
Median nTPM: 58.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 137.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 119.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 103.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 103.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 103.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 99.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 99.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 96.4
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 95.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 92.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 90.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.8
FF:10164-103B2 76 years, female 49.8
Globus pallidus
Scaled Tags Per Million: 49.6
FF:10175-103C4 60 years, female 63.9
FF:10161-103A8 76 years, female 35.4
Nucleus accumbens
Scaled Tags Per Million: 36.8
FF:10037-101F1 23-56 years, mixed 36.8
Putamen
Scaled Tags Per Million: 65.4
FF:10176-103C5 60 years, female 65.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Caudate
nTPM: 15.3
Samples: 4

Max nTPM: 16.6
Min nTPM: 14.2
Sample A Female 14.2
Sample B Female 15.3
Sample C Male 16.6
Sample D Male 15.2
Putamen
nTPM: 17.8
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.0
Sample A Female 17.1
Sample B Female 17.2
Sample C Male 19.7
Sample D Male 17.0
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 16.5
Min nTPM: 12.9
Sample A Female 16.5
Sample B Female 14.9
Sample C Male 13.0
Sample D Male 12.9
Ventral pallidum
nTPM: 15.9
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.1
Sample A Female 17.4
Sample B Female 17.1
Sample C Male 14.1
Sample D Male 15.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.6
Samples: 4

Max nTPM: 38.0
Min nTPM: 33.5
Sample A Male 33.5
Sample B Male 38.0
Sample C Female 35.1
Sample D Female 35.9
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 40.4
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 37.2
Sample C Female 40.4
Sample D Female 37.9
Ventral forebrain
nTPM: 31.2
Samples: 4

Max nTPM: 40.5
Min nTPM: 24.4
Sample A Male 24.4
Sample B Male 31.9
Sample C Female 40.5
Sample D Female 27.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
69201666 Antisense, RP_050324_03_A07, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 1.2
69201666 Antisense, RP_050324_03_A07, Mouse strain C57BL/6J (56 days, male) 1.2

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