MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.8 nTPM
HPA:53.8 nTPM
GTEx:61.7 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:37.8 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.4
2019 Male, age 18, unknown 54.7
1870 Female, age 42, unknown 53.0
1833 Male, age 53, unknown 51.9
2411 Female, age 72, unknown 51.9
1830 Male, age 51, unknown 51.4
2219 Male, age 76, both hemispheres 51.3
1827 Male, age 72, unknown 50.5
2828 Female, age 72, unknown 50.4
2586 Male, age 75, left hemisphere 50.1
2666 Male, age 74, left hemisphere 49.0
Dorsal raphe nucleus
nTPM: 52.5
1828 Male, age 53, unknown 54.6
2047 Male, age 72, unknown 53.9
2750 Male, age 76, both hemispheres 53.1
2298 Female, age 72, unknown 51.7
2016 Female, age 72, unknown 49.3
Inferior colliculus
nTPM: 53.7
1848 Female, age 42, unknown 54.9
2097 Female, age 72, unknown 53.7
2849 Male, age 72, unknown 53.2
1890 Male, age 53, unknown 53.1
Median raphe nucleus
nTPM: 52.5
2220 Male, age 76, midline 52.5
Pedunculopontine tegmental nucleus
nTPM: 53.8
2334 Male, age 80, both hemispheres 54.8
1921 Female, age 85, both hemispheres 54.3
2338 Male, age 61, both hemispheres 52.3
Periaquaductal grey, anterior
nTPM: 51.2
1947 Male, age 18, unknown 51.9
2502 Female, age 75, unknown 51.4
1795 Male, age 51, unknown 50.3
Periaquaductal grey, dorsal
nTPM: 51.6
1840 Male, age 53, unknown 53.7
2850 Male, age 76, both hemispheres 51.8
2464 Female, age 72, unknown 51.2
1831 Male, age 72, unknown 49.8
Periaquaductal grey, lateral
nTPM: 50.0
2272 Male, age 74, both hemispheres 50.3
2140 Male, age 76, both hemispheres 49.9
2053 Male, age 18, unknown 49.8
Pretectal area
nTPM: 51.8
2007 Male, age 72, unknown 54.3
1817 Female, age 42, unknown 53.7
1944 Female, age 72, unknown 53.0
1816 Male, age 51, unknown 52.9
2273 Male, age 74, both hemispheres 52.0
2224 Female, age 72, unknown 51.9
2667 Female, age 75, unknown 51.7
1815 Male, age 53, unknown 50.8
2316 Male, age 76, right hemisphere 50.8
2825 Male, age 18, unknown 49.9
2407 Male, age 75, both hemispheres 48.7
Red nucleus
nTPM: 52.8
1821 Female, age 72, unknown 57.0
2785 Male, age 18, unknown 53.6
1954 Female, age 42, unknown 53.4
2769 Male, age 72, unknown 53.2
1904 Male, age 53, unknown 52.9
2227 Male, age 72, unknown 52.8
2823 Male, age 76, right hemisphere 52.7
2725 Female, age 75, unknown 52.1
1865 Male, age 51, unknown 52.0
2588 Male, age 74, left hemisphere 51.8
2503 Female, age 72, unknown 51.5
2584 Male, age 75, left hemisphere 50.4
Substantia nigra
nTPM: 53.3
1889 Female, age 72, unknown 55.9
1916 Female, age 42, unknown 55.1
1851 Male, age 51, unknown 54.2
2241 Male, age 72, unknown 54.1
1941 Male, age 53, unknown 53.5
2665 Male, age 74, both hemispheres 53.2
2699 Male, age 18, unknown 52.3
2590 Female, age 75, unknown 52.2
2409 Female, age 72, unknown 51.6
2583 Male, age 75, right hemisphere 51.0
Superior colliculus
nTPM: 51.2
1895 Male, age 76, right hemisphere 53.9
2587 Male, age 74, left hemisphere 53.6
2668 Female, age 75, unknown 52.3
1839 Male, age 51, unknown 51.9
2087 Female, age 72, unknown 50.7
2664 Male, age 75, both hemispheres 50.7
1796 Male, age 53, unknown 50.0
2261 Male, age 18, unknown 49.7
1995 Male, age 72, unknown 49.6
1913 Female, age 42, unknown 49.4
Ventral tegmental area
nTPM: 52.1
2410 Female, age 72, unknown 54.7
1915 Female, age 42, unknown 53.3
2223 Female, age 72, unknown 52.6
2218 Male, age 76, both hemispheres 51.6
1942 Male, age 51, unknown 50.7
2021 Male, age 53, unknown 49.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.7
Samples: 139

Max nTPM: 114.8
Min nTPM: 29.8
Std nTPM: 16.5
Median nTPM: 59.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 114.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 107.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 106.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 101.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 99.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 97.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 93.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 89.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 89.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 89.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 16.0
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 13.1
Sample C Male 12.0
Sample D Male 16.0
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 12.8
Min nTPM: 11.9
Sample B Female 12.3
Sample C Male 12.8
Sample D Male 11.9
Substantia nigra
nTPM: 13.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.3
Sample A Female 16.0
Sample B Female 12.3
Sample C Male 13.5
Sample D Male 13.0
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.7
Sample A Female 15.8
Sample B Female 9.7
Sample C Male 13.3
Sample D Male 14.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.9
Samples: 4

Max nTPM: 40.1
Min nTPM: 35.6
Sample A Male 40.1
Sample B Male 36.3
Sample C Female 39.4
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69201666 Antisense, RP_050324_03_A07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.