MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103.5 nTPM
HPA:103.5 nTPM
GTEx:114.7 nTPM
FANTOM5:137.0 Scaled Tags Per Million
Pig:232.6 nTPM
Mouse:127.7 nTPM
Allen mouse:11.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.3
2019 Male, age 18, unknown 118.1
2219 Male, age 76, both hemispheres 85.9
1827 Male, age 72, unknown 85.2
2411 Female, age 72, unknown 83.3
2666 Male, age 74, left hemisphere 74.1
1870 Female, age 42, unknown 71.5
1833 Male, age 53, unknown 70.2
1830 Male, age 51, unknown 69.4
2586 Male, age 75, left hemisphere 68.1
2828 Female, age 72, unknown 67.1
Dorsal raphe nucleus
nTPM: 70.0
2298 Female, age 72, unknown 80.9
2750 Male, age 76, both hemispheres 74.1
2047 Male, age 72, unknown 70.9
1828 Male, age 53, unknown 69.0
2016 Female, age 72, unknown 55.0
Inferior colliculus
nTPM: 88.5
2097 Female, age 72, unknown 98.3
1890 Male, age 53, unknown 91.3
1848 Female, age 42, unknown 87.1
2849 Male, age 72, unknown 77.2
Median raphe nucleus
nTPM: 76.6
2220 Male, age 76, midline 76.6
Pedunculopontine tegmental nucleus
nTPM: 94.1
2334 Male, age 80, both hemispheres 121.3
2338 Male, age 61, both hemispheres 86.1
1921 Female, age 85, both hemispheres 74.9
Periaquaductal grey, anterior
nTPM: 79.4
2502 Female, age 75, unknown 95.9
1795 Male, age 51, unknown 74.0
1947 Male, age 18, unknown 68.3
Periaquaductal grey, dorsal
nTPM: 63.8
2850 Male, age 76, both hemispheres 70.7
1840 Male, age 53, unknown 62.0
2464 Female, age 72, unknown 61.7
1831 Male, age 72, unknown 60.8
Periaquaductal grey, lateral
nTPM: 73.0
2272 Male, age 74, both hemispheres 90.9
2140 Male, age 76, both hemispheres 64.9
2053 Male, age 18, unknown 63.4
Pretectal area
nTPM: 93.6
2007 Male, age 72, unknown 126.7
1816 Male, age 51, unknown 124.5
1817 Female, age 42, unknown 124.2
1944 Female, age 72, unknown 110.2
1815 Male, age 53, unknown 100.2
2273 Male, age 74, both hemispheres 88.8
2407 Male, age 75, both hemispheres 85.2
2667 Female, age 75, unknown 81.2
2825 Male, age 18, unknown 66.8
2224 Female, age 72, unknown 62.3
2316 Male, age 76, right hemisphere 59.7
Red nucleus
nTPM: 86.8
2785 Male, age 18, unknown 112.7
1821 Female, age 72, unknown 112.2
1865 Male, age 51, unknown 87.7
2588 Male, age 74, left hemisphere 86.9
1954 Female, age 42, unknown 86.7
1904 Male, age 53, unknown 86.1
2725 Female, age 75, unknown 84.8
2584 Male, age 75, left hemisphere 83.5
2769 Male, age 72, unknown 77.5
2227 Male, age 72, unknown 76.6
2503 Female, age 72, unknown 75.6
2823 Male, age 76, right hemisphere 71.7
Substantia nigra
nTPM: 103.5
1941 Male, age 53, unknown 136.0
1916 Female, age 42, unknown 132.0
1851 Male, age 51, unknown 111.6
1889 Female, age 72, unknown 108.0
2241 Male, age 72, unknown 107.9
2665 Male, age 74, both hemispheres 93.7
2409 Female, age 72, unknown 92.5
2583 Male, age 75, right hemisphere 88.0
2590 Female, age 75, unknown 87.1
2699 Male, age 18, unknown 77.7
Superior colliculus
nTPM: 81.6
2087 Female, age 72, unknown 98.1
2261 Male, age 18, unknown 94.8
2587 Male, age 74, left hemisphere 91.4
2668 Female, age 75, unknown 87.3
1796 Male, age 53, unknown 84.9
1895 Male, age 76, right hemisphere 79.6
1913 Female, age 42, unknown 73.6
1995 Male, age 72, unknown 73.0
1839 Male, age 51, unknown 70.7
2664 Male, age 75, both hemispheres 62.9
Ventral tegmental area
nTPM: 87.0
2410 Female, age 72, unknown 111.0
1915 Female, age 42, unknown 96.1
2218 Male, age 76, both hemispheres 89.1
2223 Female, age 72, unknown 88.6
1942 Male, age 51, unknown 76.1
2021 Male, age 53, unknown 61.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 114.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.7
Samples: 139

Max nTPM: 574.9
Min nTPM: 27.0
Std nTPM: 63.4
Median nTPM: 101.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 574.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 351.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 322.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 241.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 225.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 218.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 216.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 208.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 207.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 185.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 182.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.0
FF:10158-103A5 76 years, female 137.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 232.6
Pig sample Sample description nTPM
Midbrain
nTPM: 232.6
Samples: 4

Max nTPM: 296.2
Min nTPM: 102.1
Sample A Female 290.3
Sample B Female 102.1
Sample C Male 296.2
Sample D Male 241.8
Periaqueductal gray
nTPM: 107.4
Samples: 3

Max nTPM: 133.7
Min nTPM: 93.3
Sample B Female 93.3
Sample C Male 133.7
Sample D Male 95.2
Substantia nigra
nTPM: 145.6
Samples: 4

Max nTPM: 195.6
Min nTPM: 100.5
Sample A Female 195.6
Sample B Female 100.5
Sample C Male 151.8
Sample D Male 134.6
Superior colliculi
nTPM: 220.8
Samples: 4

Max nTPM: 276.8
Min nTPM: 148.4
Sample A Female 253.7
Sample B Female 148.4
Sample C Male 276.8
Sample D Male 204.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 127.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.7
Samples: 4

Max nTPM: 133.1
Min nTPM: 119.9
Sample A Male 119.9
Sample B Male 126.3
Sample C Female 133.1
Sample D Female 131.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.3
71836844 Antisense, RP_051017_02_C07, Mouse strain C57BL/6J (56 days, male) 14.7
100055054 Antisense, RP_080110_01_A05, Mouse strain C57BL/6J (56 days, male) 13.9
100055069 Antisense, RP_080110_01_A05, Mouse strain C57BL/6J (56 days, male) 13.2
100055045 Antisense, RP_080110_01_A05, Mouse strain C57BL/6J (56 days, male) 13.2
68157413 Antisense, RP_041116_02_F06, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.