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  • ATP1A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:117.4 nTPM
HPA:117.4 nTPM
GTEx:141.7 nTPM
FANTOM5:119.2 Scaled Tags Per Million
Pig:217.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 117.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 88.4
2565 Male, age 75, midline 117.0
1981 Female, age 72, midline 92.4
2816 Male, age 47, midline 81.2
2194 Female, age 79, both hemispheres 79.8
2048 Male, age 55, midline 71.8
Cervical spinal cord, dorsal horn
nTPM: 117.4
2296 Male, age 66, both hemispheres 136.1
2297 Male, age 75, both hemispheres 126.4
2069 Male, age 47, both hemispheres 124.2
1877 Male, age 55, unknown 116.2
2173 Female, age 72, unknown 113.0
2721 Male, age 90, both hemispheres 88.4
Cervical spinal cord, ventral horn
nTPM: 96.6
2480 Male, age 75, both hemispheres 127.5
2809 Male, age 90, both hemispheres 102.2
2098 Female, age 72, unknown 95.5
2295 Male, age 66, both hemispheres 87.8
2068 Male, age 55, unknown 85.5
2820 Female, age 79, both hemispheres 80.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 141.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 141.7
Samples: 159

Max nTPM: 322.5
Min nTPM: 82.9
Std nTPM: 38.1
Median nTPM: 134.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 322.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 312.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 276.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 248.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 241.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 231.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 223.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 223.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 202.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 199.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 193.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 190.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 189.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 189.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 182.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 182.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 181.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 180.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 177.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 175.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 174.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 173.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 170.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 168.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 168.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 168.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 167.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 166.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 166.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 163.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 163.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 162.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 162.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 160.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 160.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 160.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 159.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 159.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 158.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 157.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 157.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 157.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 156.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 155.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 155.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 154.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 152.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 151.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 150.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 150.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 150.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 150.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 149.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 149.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 149.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 148.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 146.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 146.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 145.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 145.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 144.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 142.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 142.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 141.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 141.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 141.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 140.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 139.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 139.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 139.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 137.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 137.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 137.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 137.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 137.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 136.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 135.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 135.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 134.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 134.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 134.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 133.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 133.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 133.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 133.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 132.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 131.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 131.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 131.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 130.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 130.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 130.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 130.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 129.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 128.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 128.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 127.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 127.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 126.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 126.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 126.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 125.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 124.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 124.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 123.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 123.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 123.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 123.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 123.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 123.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 122.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 122.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 122.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 122.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 121.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 121.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 120.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 120.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 120.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 118.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 117.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 117.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 116.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 116.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 115.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 115.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 114.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 112.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 111.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 110.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 109.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 109.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 108.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 108.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 108.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 108.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 105.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 105.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 104.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 104.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 103.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 100.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 100.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 99.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 98.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 98.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 97.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 96.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 94.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 94.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 92.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 90.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 88.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 87.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 84.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 84.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 82.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 119.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.2
FF:10159-103A6 76 years, female 125.7
FF:10181-103D1 60 years, female 112.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 217.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 163.5
Samples: 4

Max nTPM: 219.9
Min nTPM: 124.9
Sample A Female 219.9
Sample B Female 127.7
Sample C Male 124.9
Sample D Male 181.5
Ventral spinal cord
nTPM: 217.1
Samples: 4

Max nTPM: 251.4
Min nTPM: 173.3
Sample A Female 251.4
Sample B Female 220.9
Sample C Male 222.9
Sample D Male 173.3

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