MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:138.7 nTPM
HPA:138.7 nTPM
GTEx:202.5 nTPM
FANTOM5:549.2 Scaled Tags Per Million
Pig:116.3 nTPM
Mouse:28.5 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 138.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.0
2828 Female, age 72, unknown 127.3
2019 Male, age 18, unknown 116.4
2586 Male, age 75, left hemisphere 106.2
1833 Male, age 53, unknown 105.4
2666 Male, age 74, left hemisphere 105.3
1830 Male, age 51, unknown 105.0
1827 Male, age 72, unknown 104.5
1870 Female, age 42, unknown 103.0
2411 Female, age 72, unknown 97.9
2219 Male, age 76, both hemispheres 79.3
Dorsal raphe nucleus
nTPM: 120.1
2016 Female, age 72, unknown 135.1
1828 Male, age 53, unknown 120.7
2047 Male, age 72, unknown 119.3
2298 Female, age 72, unknown 117.7
2750 Male, age 76, both hemispheres 107.6
Inferior colliculus
nTPM: 131.5
1848 Female, age 42, unknown 143.6
2097 Female, age 72, unknown 136.7
1890 Male, age 53, unknown 133.7
2849 Male, age 72, unknown 111.9
Median raphe nucleus
nTPM: 89.7
2220 Male, age 76, midline 89.7
Pedunculopontine tegmental nucleus
nTPM: 122.6
2338 Male, age 61, both hemispheres 163.1
2334 Male, age 80, both hemispheres 109.2
1921 Female, age 85, both hemispheres 95.4
Periaquaductal grey, anterior
nTPM: 121.9
2502 Female, age 75, unknown 129.0
1947 Male, age 18, unknown 121.7
1795 Male, age 51, unknown 115.0
Periaquaductal grey, dorsal
nTPM: 107.8
2464 Female, age 72, unknown 114.5
1840 Male, age 53, unknown 111.7
2850 Male, age 76, both hemispheres 106.7
1831 Male, age 72, unknown 98.3
Periaquaductal grey, lateral
nTPM: 138.7
2272 Male, age 74, both hemispheres 179.1
2140 Male, age 76, both hemispheres 124.5
2053 Male, age 18, unknown 112.3
Pretectal area
nTPM: 104.8
2273 Male, age 74, both hemispheres 121.6
1817 Female, age 42, unknown 118.2
2224 Female, age 72, unknown 113.3
2316 Male, age 76, right hemisphere 111.5
2667 Female, age 75, unknown 107.0
1816 Male, age 51, unknown 102.3
2825 Male, age 18, unknown 100.5
1944 Female, age 72, unknown 96.4
1815 Male, age 53, unknown 95.0
2407 Male, age 75, both hemispheres 94.3
2007 Male, age 72, unknown 93.0
Red nucleus
nTPM: 131.0
2227 Male, age 72, unknown 164.2
2769 Male, age 72, unknown 154.8
1954 Female, age 42, unknown 140.0
1821 Female, age 72, unknown 139.3
2503 Female, age 72, unknown 132.4
1904 Male, age 53, unknown 129.7
1865 Male, age 51, unknown 129.3
2823 Male, age 76, right hemisphere 128.1
2725 Female, age 75, unknown 126.9
2785 Male, age 18, unknown 118.5
2588 Male, age 74, left hemisphere 117.0
2584 Male, age 75, left hemisphere 91.6
Substantia nigra
nTPM: 98.9
2699 Male, age 18, unknown 110.6
2665 Male, age 74, both hemispheres 109.6
1851 Male, age 51, unknown 107.0
1889 Female, age 72, unknown 103.6
2590 Female, age 75, unknown 99.6
1916 Female, age 42, unknown 95.1
1941 Male, age 53, unknown 94.0
2241 Male, age 72, unknown 91.9
2583 Male, age 75, right hemisphere 89.9
2409 Female, age 72, unknown 87.7
Superior colliculus
nTPM: 106.3
1995 Male, age 72, unknown 112.5
2587 Male, age 74, left hemisphere 112.1
2261 Male, age 18, unknown 111.8
2087 Female, age 72, unknown 109.7
1895 Male, age 76, right hemisphere 108.9
1839 Male, age 51, unknown 108.0
1796 Male, age 53, unknown 104.0
1913 Female, age 42, unknown 103.7
2668 Female, age 75, unknown 98.2
2664 Male, age 75, both hemispheres 93.9
Ventral tegmental area
nTPM: 105.5
2223 Female, age 72, unknown 116.4
2021 Male, age 53, unknown 113.8
1915 Female, age 42, unknown 107.1
1942 Male, age 51, unknown 100.6
2410 Female, age 72, unknown 99.0
2218 Male, age 76, both hemispheres 95.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 202.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 202.5
Samples: 139

Max nTPM: 572.2
Min nTPM: 56.4
Std nTPM: 95.0
Median nTPM: 178.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 572.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 535.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 529.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 438.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 402.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 399.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 389.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 371.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 359.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 357.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 356.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 549.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 549.2
FF:10158-103A5 76 years, female 549.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 116.3
Pig sample Sample description nTPM
Midbrain
nTPM: 75.2
Samples: 4

Max nTPM: 96.8
Min nTPM: 54.8
Sample A Female 88.4
Sample B Female 54.8
Sample C Male 96.8
Sample D Male 60.9
Periaqueductal gray
nTPM: 52.0
Samples: 3

Max nTPM: 59.5
Min nTPM: 44.9
Sample B Female 51.6
Sample C Male 59.5
Sample D Male 44.9
Substantia nigra
nTPM: 95.6
Samples: 4

Max nTPM: 157.8
Min nTPM: 56.3
Sample A Female 90.0
Sample B Female 157.8
Sample C Male 56.3
Sample D Male 78.4
Superior colliculi
nTPM: 116.3
Samples: 4

Max nTPM: 187.1
Min nTPM: 84.8
Sample A Female 104.0
Sample B Female 187.1
Sample C Male 84.8
Sample D Male 89.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 30.3
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 28.8
Sample C Female 28.7
Sample D Female 30.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
81654139 Antisense, RP_090205_01_B05, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.