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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:153.7 nTPM
HPA:153.7 nTPM
GTEx:118.6 nTPM
FANTOM5:76.3 Scaled Tags Per Million
Pig:49.7 nTPM
Mouse:58.9 nTPM
Allen mouse:0.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 153.7
Sample id Sample description nTPM
Amygdala
nTPM: 153.7
2695 Female, age 67, right hemisphere 158.7
2814 Male, age 76, right hemisphere 155.5
1987 Female, age 91, left hemisphere 153.0
2514 Male, age 75, right hemisphere 153.0
2517 Female, age 94, left hemisphere 148.4
Basal amygdala
nTPM: 150.0
1955 Male, age 76, both hemispheres 154.9
2243 Female, age 91, right hemisphere 151.4
2110 Male, age 80, left hemisphere 151.3
2609 Male, age 75, right hemisphere 150.5
2685 Female, age 94, left hemisphere 150.1
2827 Female, age 67, right hemisphere 141.8
Central amygdala
nTPM: 151.7
1905 Male, age 76, both hemispheres 155.1
2826 Female, age 94, left hemisphere 152.9
2239 Male, age 80, left hemisphere 152.0
2701 Female, age 91, right hemisphere 149.4
2515 Male, age 75, right hemisphere 149.1
Corticomedial amygdala
nTPM: 149.8
2240 Male, age 76, both hemispheres 154.4
2829 Male, age 80, left hemisphere 153.0
2428 Male, age 75, right hemisphere 150.3
2242 Female, age 91, right hemisphere 150.1
2429 Female, age 94, left hemisphere 147.3
2535 Female, age 67, right hemisphere 143.8
Lateral amygdala
nTPM: 148.2
1883 Male, age 76, both hemispheres 153.9
2516 Male, age 75, right hemisphere 151.2
2534 Female, age 94, left hemisphere 147.8
2256 Male, age 80, left hemisphere 145.9
2255 Female, age 91, right hemisphere 145.6
2830 Female, age 67, right hemisphere 144.5
Stria terminalis, bed nucleus
nTPM: 145.8
1974 Female, age 91, both hemispheres 147.4
2201 Male, age 74, unknown 147.4
2486 Female, age 94, both hemispheres 142.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 118.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 118.6
Samples: 152

Max nTPM: 206.5
Min nTPM: 49.4
Std nTPM: 30.1
Median nTPM: 114.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 206.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 204.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 191.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 190.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 189.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 189.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 185.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 179.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 178.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 175.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 167.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 166.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 162.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 160.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 158.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 158.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 156.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 155.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 152.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 151.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 151.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 148.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 147.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 146.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 145.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 144.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 143.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 140.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 139.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 139.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 138.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 136.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 135.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 135.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 134.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 133.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 132.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 131.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 131.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 131.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 127.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 127.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 127.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 127.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 127.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 126.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 126.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 125.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 125.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 125.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 125.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 125.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 125.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 124.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 122.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 122.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 121.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 121.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 120.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 119.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 119.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 118.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 118.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 117.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 117.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 116.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 116.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 115.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 114.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 114.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 114.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 112.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 112.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 112.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 112.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 112.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 111.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 111.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 111.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 110.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 110.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 109.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 109.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 109.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 108.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 107.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 106.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 106.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 106.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 103.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 102.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 101.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 99.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 99.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 99.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 98.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 98.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 98.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 98.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 97.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 97.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 97.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 97.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 96.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 96.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 96.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 94.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 94.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 93.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 93.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 93.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 92.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 91.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 90.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 90.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 90.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 89.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 89.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 88.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 88.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 83.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 81.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 81.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 80.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 80.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 79.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 78.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 76.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 72.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 72.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 71.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 67.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 67.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 64.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 62.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 49.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 76.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 76.3
FF:10151-102I7 76 years, female 76.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.7
Pig sample Sample description nTPM
Amygdala
nTPM: 49.7
Samples: 4

Max nTPM: 59.6
Min nTPM: 42.8
Sample A Female 59.6
Sample B Female 47.6
Sample C Male 42.8
Sample D Male 48.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 58.9
Samples: 4

Max nTPM: 63.9
Min nTPM: 49.5
Sample A Male 49.5
Sample B Male 61.1
Sample C Female 63.9
Sample D Female 60.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.7
67767459 Antisense, RP_040916_02_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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