MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:159.7 nTPM
HPA:159.7 nTPM
GTEx:142.6 nTPM
FANTOM5:132.7 Scaled Tags Per Million
Pig:85.0 nTPM
Mouse:53.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 159.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.8
1870 Female, age 42, unknown 162.3
1830 Male, age 51, unknown 156.5
1833 Male, age 53, unknown 156.1
2411 Female, age 72, unknown 155.0
2828 Female, age 72, unknown 153.7
1827 Male, age 72, unknown 153.3
2019 Male, age 18, unknown 151.8
2666 Male, age 74, left hemisphere 149.0
2219 Male, age 76, both hemispheres 148.1
2586 Male, age 75, left hemisphere 142.3
Dorsal raphe nucleus
nTPM: 153.8
2298 Female, age 72, unknown 157.1
2750 Male, age 76, both hemispheres 155.3
1828 Male, age 53, unknown 153.4
2047 Male, age 72, unknown 152.6
2016 Female, age 72, unknown 150.6
Inferior colliculus
nTPM: 152.3
2849 Male, age 72, unknown 155.3
2097 Female, age 72, unknown 152.5
1848 Female, age 42, unknown 150.7
1890 Male, age 53, unknown 150.6
Median raphe nucleus
nTPM: 159.7
2220 Male, age 76, midline 159.7
Pedunculopontine tegmental nucleus
nTPM: 159.5
2338 Male, age 61, both hemispheres 166.5
2334 Male, age 80, both hemispheres 159.3
1921 Female, age 85, both hemispheres 152.7
Periaquaductal grey, anterior
nTPM: 150.4
1947 Male, age 18, unknown 152.5
2502 Female, age 75, unknown 149.6
1795 Male, age 51, unknown 149.3
Periaquaductal grey, dorsal
nTPM: 151.9
2850 Male, age 76, both hemispheres 160.9
1831 Male, age 72, unknown 151.3
1840 Male, age 53, unknown 148.5
2464 Female, age 72, unknown 146.8
Periaquaductal grey, lateral
nTPM: 153.8
2272 Male, age 74, both hemispheres 157.8
2140 Male, age 76, both hemispheres 153.1
2053 Male, age 18, unknown 150.5
Pretectal area
nTPM: 153.7
2273 Male, age 74, both hemispheres 158.8
1815 Male, age 53, unknown 157.9
1817 Female, age 42, unknown 157.9
2667 Female, age 75, unknown 157.3
2224 Female, age 72, unknown 154.8
2825 Male, age 18, unknown 153.7
1944 Female, age 72, unknown 152.5
2407 Male, age 75, both hemispheres 151.4
2007 Male, age 72, unknown 150.2
1816 Male, age 51, unknown 148.3
2316 Male, age 76, right hemisphere 147.2
Red nucleus
nTPM: 157.1
2823 Male, age 76, right hemisphere 164.9
1821 Female, age 72, unknown 163.3
1954 Female, age 42, unknown 160.9
1904 Male, age 53, unknown 160.7
1865 Male, age 51, unknown 159.4
2725 Female, age 75, unknown 158.6
2227 Male, age 72, unknown 156.9
2503 Female, age 72, unknown 155.1
2769 Male, age 72, unknown 154.9
2785 Male, age 18, unknown 154.1
2584 Male, age 75, left hemisphere 151.7
2588 Male, age 74, left hemisphere 144.4
Substantia nigra
nTPM: 155.1
2699 Male, age 18, unknown 167.7
1916 Female, age 42, unknown 159.3
2665 Male, age 74, both hemispheres 155.9
1851 Male, age 51, unknown 155.2
1889 Female, age 72, unknown 155.0
1941 Male, age 53, unknown 154.8
2241 Male, age 72, unknown 154.4
2409 Female, age 72, unknown 152.2
2590 Female, age 75, unknown 149.5
2583 Male, age 75, right hemisphere 146.9
Superior colliculus
nTPM: 153.0
1913 Female, age 42, unknown 159.9
2587 Male, age 74, left hemisphere 158.7
1839 Male, age 51, unknown 155.9
1895 Male, age 76, right hemisphere 155.0
1995 Male, age 72, unknown 155.0
2668 Female, age 75, unknown 153.5
1796 Male, age 53, unknown 151.4
2087 Female, age 72, unknown 148.3
2261 Male, age 18, unknown 146.8
2664 Male, age 75, both hemispheres 145.8
Ventral tegmental area
nTPM: 155.0
2218 Male, age 76, both hemispheres 157.6
1915 Female, age 42, unknown 157.5
2410 Female, age 72, unknown 156.9
2223 Female, age 72, unknown 156.0
1942 Male, age 51, unknown 151.7
2021 Male, age 53, unknown 150.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 142.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.6
Samples: 139

Max nTPM: 361.5
Min nTPM: 66.4
Std nTPM: 41.6
Median nTPM: 133.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 361.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 295.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 273.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 246.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 236.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 231.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 224.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 213.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 206.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 204.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 201.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.7
FF:10158-103A5 76 years, female 132.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.0
Pig sample Sample description nTPM
Midbrain
nTPM: 76.3
Samples: 4

Max nTPM: 100.3
Min nTPM: 65.4
Sample A Female 100.3
Sample B Female 73.4
Sample C Male 65.4
Sample D Male 66.2
Periaqueductal gray
nTPM: 71.4
Samples: 3

Max nTPM: 77.9
Min nTPM: 66.8
Sample B Female 69.5
Sample C Male 77.9
Sample D Male 66.8
Substantia nigra
nTPM: 80.6
Samples: 4

Max nTPM: 90.2
Min nTPM: 75.1
Sample A Female 90.2
Sample B Female 75.1
Sample C Male 75.7
Sample D Male 81.4
Superior colliculi
nTPM: 85.0
Samples: 4

Max nTPM: 95.2
Min nTPM: 76.8
Sample A Female 95.2
Sample B Female 88.2
Sample C Male 79.8
Sample D Male 76.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 56.7
Min nTPM: 49.3
Sample A Male 53.4
Sample B Male 56.7
Sample C Female 49.3
Sample D Female 53.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
67767459 Antisense, RP_040916_02_A09, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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