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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:160.0 nTPM
HPA:160.0 nTPM
GTEx:170.4 nTPM
FANTOM5:149.9 Scaled Tags Per Million
Pig:99.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 160.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 158.4
1981 Female, age 72, midline 168.5
2565 Male, age 75, midline 158.8
2816 Male, age 47, midline 158.0
2048 Male, age 55, midline 154.0
2194 Female, age 79, both hemispheres 152.5
Cervical spinal cord, dorsal horn
nTPM: 160.0
2296 Male, age 66, both hemispheres 171.7
2173 Female, age 72, unknown 169.7
2069 Male, age 47, both hemispheres 157.8
1877 Male, age 55, unknown 155.7
2721 Male, age 90, both hemispheres 154.0
2297 Male, age 75, both hemispheres 151.0
Cervical spinal cord, ventral horn
nTPM: 158.2
2098 Female, age 72, unknown 173.4
2809 Male, age 90, both hemispheres 162.6
2068 Male, age 55, unknown 155.6
2480 Male, age 75, both hemispheres 155.0
2820 Female, age 79, both hemispheres 153.0
2295 Male, age 66, both hemispheres 149.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 170.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 170.4
Samples: 159

Max nTPM: 276.2
Min nTPM: 78.8
Std nTPM: 40.1
Median nTPM: 164.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 276.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 271.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 264.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 257.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 255.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 255.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 254.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 252.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 245.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 245.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 244.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 240.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 236.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 234.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 231.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 230.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 224.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 224.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 222.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 219.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 218.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 217.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 211.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 210.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 208.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 207.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 207.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 207.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 206.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 205.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 203.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 201.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 201.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 199.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 198.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 198.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 196.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 194.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 193.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 193.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 192.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 189.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 189.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 189.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 187.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 187.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 187.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 187.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 186.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 185.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 184.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 184.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 183.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 182.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 182.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 182.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 181.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 180.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 180.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 179.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 178.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 178.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 177.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 175.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 174.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 174.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 174.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 172.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 172.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 172.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 172.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 171.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 171.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 170.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 170.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 168.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 168.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 164.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 164.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 164.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 163.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 163.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 163.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 162.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 162.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 162.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 161.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 161.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 161.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 160.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 160.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 160.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 159.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 159.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 158.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 157.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 156.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 155.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 154.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 154.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 153.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 153.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 153.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 153.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 151.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 150.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 149.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 149.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 149.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 149.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 149.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 148.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 147.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 146.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 146.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 145.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 145.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 143.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 143.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 143.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 142.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 142.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 140.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 140.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 139.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 136.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 135.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 135.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 135.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 133.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 133.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 133.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 132.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 132.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 132.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 130.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 129.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 128.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 127.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 127.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 123.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 122.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 121.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 120.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 118.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 116.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 115.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 111.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 111.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 109.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 106.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 106.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 99.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 99.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 92.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 92.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 87.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 78.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 149.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 149.9
FF:10181-103D1 60 years, female 176.0
FF:10159-103A6 76 years, female 123.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 99.2
Samples: 4

Max nTPM: 128.7
Min nTPM: 76.1
Sample A Female 76.1
Sample B Female 99.6
Sample C Male 128.7
Sample D Male 92.2
Ventral spinal cord
nTPM: 95.3
Samples: 4

Max nTPM: 114.1
Min nTPM: 80.8
Sample A Female 80.8
Sample B Female 91.8
Sample C Male 114.1
Sample D Male 94.5

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