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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:114.0 nTPM
HPA:114.0 nTPM
GTEx:132.3 nTPM
FANTOM5:144.2 Scaled Tags Per Million
Pig:79.2 nTPM
Mouse:243.1 nTPM
Allen mouse:12.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 114.0
Sample id Sample description nTPM
Amygdala
nTPM: 112.2
2514 Male, age 75, right hemisphere 117.8
1987 Female, age 91, left hemisphere 115.9
2695 Female, age 67, right hemisphere 110.6
2517 Female, age 94, left hemisphere 109.1
2814 Male, age 76, right hemisphere 107.7
Basal amygdala
nTPM: 109.4
2243 Female, age 91, right hemisphere 115.2
2685 Female, age 94, left hemisphere 110.3
2110 Male, age 80, left hemisphere 110.0
2609 Male, age 75, right hemisphere 110.0
1955 Male, age 76, both hemispheres 109.0
2827 Female, age 67, right hemisphere 101.7
Central amygdala
nTPM: 106.5
2826 Female, age 94, left hemisphere 109.2
2239 Male, age 80, left hemisphere 108.6
2515 Male, age 75, right hemisphere 108.5
1905 Male, age 76, both hemispheres 103.4
2701 Female, age 91, right hemisphere 103.0
Corticomedial amygdala
nTPM: 112.6
2242 Female, age 91, right hemisphere 121.2
2829 Male, age 80, left hemisphere 117.4
2428 Male, age 75, right hemisphere 113.6
2429 Female, age 94, left hemisphere 112.9
2240 Male, age 76, both hemispheres 109.8
2535 Female, age 67, right hemisphere 100.7
Lateral amygdala
nTPM: 105.6
1883 Male, age 76, both hemispheres 110.1
2534 Female, age 94, left hemisphere 110.0
2516 Male, age 75, right hemisphere 108.6
2256 Male, age 80, left hemisphere 104.6
2830 Female, age 67, right hemisphere 100.9
2255 Female, age 91, right hemisphere 99.6
Stria terminalis, bed nucleus
nTPM: 114.0
1974 Female, age 91, both hemispheres 122.5
2486 Female, age 94, both hemispheres 114.3
2201 Male, age 74, unknown 105.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 132.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.3
Samples: 152

Max nTPM: 330.8
Min nTPM: 87.9
Std nTPM: 30.3
Median nTPM: 127.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 330.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 232.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 223.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 207.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 196.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 194.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 193.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 187.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 185.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 180.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 178.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 178.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 176.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 175.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 165.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 162.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 160.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 160.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 158.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 154.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 154.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 153.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 152.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 152.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 149.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 148.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 148.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 147.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 146.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 146.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 146.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 144.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 143.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 143.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 142.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 142.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 141.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 140.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 140.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 139.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 139.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 138.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 137.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 136.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 136.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 136.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 135.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 135.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 135.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 135.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 134.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 134.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 134.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 134.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 133.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 133.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 133.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 131.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 131.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 131.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 129.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 129.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 129.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 129.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 128.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 128.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 127.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 127.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 127.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 126.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 126.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 125.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 125.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 125.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 124.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 123.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 123.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 122.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 122.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 122.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 121.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 121.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 121.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 121.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 120.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 120.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 120.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 120.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 117.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 117.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 117.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 117.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 116.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 114.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 114.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 114.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 114.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 114.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 114.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 113.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 113.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 112.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 111.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 111.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 111.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 110.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 109.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 108.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 107.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 106.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 105.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 105.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 105.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 105.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 104.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 104.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 104.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 103.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 102.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 101.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 100.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 100.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 97.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 96.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 96.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 95.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 95.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 91.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 87.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 144.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 144.2
FF:10151-102I7 76 years, female 144.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.2
Pig sample Sample description nTPM
Amygdala
nTPM: 79.1
Samples: 4

Max nTPM: 105.0
Min nTPM: 66.6
Sample A Female 105.0
Sample B Female 77.7
Sample C Male 66.6
Sample D Male 67.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 243.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 243.1
Samples: 4

Max nTPM: 249.2
Min nTPM: 236.9
Sample A Male 236.9
Sample B Male 245.5
Sample C Female 249.2
Sample D Female 240.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.0
69526892 Antisense, RP_050421_01_H01, Mouse strain C57BL/6J (56 days, male) 12.0

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