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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:117.8 nTPM
HPA:117.8 nTPM
GTEx:101.3 nTPM
FANTOM5:134.6 Scaled Tags Per Million
Pig:101.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 117.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.5
1981 Female, age 72, midline 121.0
2048 Male, age 55, midline 111.7
2565 Male, age 75, midline 109.7
2194 Female, age 79, both hemispheres 106.1
2816 Male, age 47, midline 104.2
Cervical spinal cord, dorsal horn
nTPM: 117.6
2069 Male, age 47, both hemispheres 124.5
2173 Female, age 72, unknown 123.3
2297 Male, age 75, both hemispheres 117.4
2721 Male, age 90, both hemispheres 115.5
1877 Male, age 55, unknown 113.3
2296 Male, age 66, both hemispheres 111.7
Cervical spinal cord, ventral horn
nTPM: 117.8
2809 Male, age 90, both hemispheres 127.5
2098 Female, age 72, unknown 126.6
2480 Male, age 75, both hemispheres 124.1
2295 Male, age 66, both hemispheres 118.5
2068 Male, age 55, unknown 108.8
2820 Female, age 79, both hemispheres 101.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 101.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 101.3
Samples: 159

Max nTPM: 201.8
Min nTPM: 60.3
Std nTPM: 20.4
Median nTPM: 96.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 201.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 179.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 164.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 164.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 158.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 154.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 151.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 150.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 132.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 132.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 132.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 130.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 130.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 129.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 125.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 123.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 122.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 122.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 122.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 122.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 122.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 121.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 121.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 119.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 116.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 116.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 116.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 114.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 113.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 113.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 112.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 112.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 112.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 110.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 109.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 109.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 109.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 108.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 108.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 107.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 106.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 106.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 105.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 105.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 104.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 104.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 104.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 104.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 104.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 104.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 104.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 103.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 103.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 103.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 102.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 102.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 102.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 102.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 102.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 101.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 101.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 101.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 100.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 100.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 99.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 99.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 99.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 99.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 99.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 98.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 98.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 98.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 98.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 97.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 97.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 96.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 96.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 96.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 96.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 96.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 96.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 96.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 95.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 95.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 94.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 94.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 94.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 94.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 94.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 94.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 94.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 94.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 93.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 93.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 93.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 93.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 93.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 92.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 92.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 92.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 92.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 92.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 91.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 91.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 90.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 90.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 89.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 89.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 89.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 89.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 89.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 89.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 88.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 87.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 87.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 87.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 87.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 87.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 87.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 87.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 87.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 86.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 86.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 85.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 85.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 85.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 85.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 85.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 85.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 85.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 84.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 84.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 84.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 84.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 84.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 84.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 83.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 83.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 83.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 83.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 83.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 82.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 81.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 81.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 81.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 80.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 80.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 79.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 79.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 78.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 72.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 72.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 72.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 71.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 60.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 134.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 134.6
FF:10181-103D1 60 years, female 146.8
FF:10159-103A6 76 years, female 122.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 101.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 101.5
Samples: 4

Max nTPM: 117.3
Min nTPM: 82.4
Sample A Female 82.4
Sample B Female 107.2
Sample C Male 117.3
Sample D Male 99.2
Ventral spinal cord
nTPM: 101.9
Samples: 4

Max nTPM: 109.5
Min nTPM: 90.8
Sample A Female 90.8
Sample B Female 99.3
Sample C Male 109.5
Sample D Male 107.8

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