MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:100.1 nTPM
HPA:100.1 nTPM
GTEx:80.1 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:178.3 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.1
2586 Male, age 75, left hemisphere 101.5
2411 Female, age 72, unknown 100.6
1833 Male, age 53, unknown 96.2
1830 Male, age 51, unknown 95.5
1870 Female, age 42, unknown 93.7
2019 Male, age 18, unknown 89.5
2828 Female, age 72, unknown 88.5
2666 Male, age 74, left hemisphere 87.3
1827 Male, age 72, unknown 85.1
2219 Male, age 76, both hemispheres 83.5
Dorsal raphe nucleus
nTPM: 84.5
2750 Male, age 76, both hemispheres 94.0
1828 Male, age 53, unknown 86.8
2016 Female, age 72, unknown 83.8
2047 Male, age 72, unknown 82.4
2298 Female, age 72, unknown 75.7
Inferior colliculus
nTPM: 82.0
2849 Male, age 72, unknown 84.0
1890 Male, age 53, unknown 83.2
1848 Female, age 42, unknown 81.1
2097 Female, age 72, unknown 79.8
Median raphe nucleus
nTPM: 78.8
2220 Male, age 76, midline 78.8
Pedunculopontine tegmental nucleus
nTPM: 78.4
2334 Male, age 80, both hemispheres 82.4
1921 Female, age 85, both hemispheres 81.7
2338 Male, age 61, both hemispheres 71.0
Periaquaductal grey, anterior
nTPM: 81.5
2502 Female, age 75, unknown 86.2
1947 Male, age 18, unknown 82.1
1795 Male, age 51, unknown 76.1
Periaquaductal grey, dorsal
nTPM: 76.0
2464 Female, age 72, unknown 84.4
1831 Male, age 72, unknown 74.8
1840 Male, age 53, unknown 73.8
2850 Male, age 76, both hemispheres 70.8
Periaquaductal grey, lateral
nTPM: 74.2
2053 Male, age 18, unknown 76.7
2272 Male, age 74, both hemispheres 73.3
2140 Male, age 76, both hemispheres 72.6
Pretectal area
nTPM: 81.0
2407 Male, age 75, both hemispheres 90.9
2316 Male, age 76, right hemisphere 85.8
1815 Male, age 53, unknown 85.3
1817 Female, age 42, unknown 85.0
2825 Male, age 18, unknown 85.0
2007 Male, age 72, unknown 83.2
2667 Female, age 75, unknown 81.6
1944 Female, age 72, unknown 75.0
1816 Male, age 51, unknown 74.9
2224 Female, age 72, unknown 74.0
2273 Male, age 74, both hemispheres 70.8
Red nucleus
nTPM: 100.1
1904 Male, age 53, unknown 106.1
2227 Male, age 72, unknown 104.9
2588 Male, age 74, left hemisphere 104.5
2769 Male, age 72, unknown 104.1
1865 Male, age 51, unknown 103.7
2503 Female, age 72, unknown 102.6
2823 Male, age 76, right hemisphere 99.9
1821 Female, age 72, unknown 99.0
1954 Female, age 42, unknown 97.8
2785 Male, age 18, unknown 94.5
2584 Male, age 75, left hemisphere 94.3
2725 Female, age 75, unknown 90.3
Substantia nigra
nTPM: 86.0
2699 Male, age 18, unknown 93.8
1851 Male, age 51, unknown 93.5
2583 Male, age 75, right hemisphere 92.6
1916 Female, age 42, unknown 88.8
1889 Female, age 72, unknown 84.7
2409 Female, age 72, unknown 84.5
2590 Female, age 75, unknown 83.1
2665 Male, age 74, both hemispheres 82.8
1941 Male, age 53, unknown 79.7
2241 Male, age 72, unknown 76.2
Superior colliculus
nTPM: 87.5
1995 Male, age 72, unknown 96.4
1913 Female, age 42, unknown 96.0
1895 Male, age 76, right hemisphere 91.6
2668 Female, age 75, unknown 91.3
1839 Male, age 51, unknown 88.1
2664 Male, age 75, both hemispheres 87.4
2587 Male, age 74, left hemisphere 85.4
1796 Male, age 53, unknown 82.8
2087 Female, age 72, unknown 78.8
2261 Male, age 18, unknown 77.4
Ventral tegmental area
nTPM: 87.2
2410 Female, age 72, unknown 96.8
1915 Female, age 42, unknown 88.0
2223 Female, age 72, unknown 87.5
1942 Male, age 51, unknown 85.9
2021 Male, age 53, unknown 82.9
2218 Male, age 76, both hemispheres 81.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.1
Samples: 139

Max nTPM: 207.5
Min nTPM: 37.8
Std nTPM: 27.7
Median nTPM: 71.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 207.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 189.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 166.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 141.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 140.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 136.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 133.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 132.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 126.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 121.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.9
Pig sample Sample description nTPM
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 44.0
Min nTPM: 30.2
Sample A Female 44.0
Sample B Female 31.4
Sample C Male 30.2
Sample D Male 30.2
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 28.6
Min nTPM: 25.7
Sample B Female 28.6
Sample C Male 26.9
Sample D Male 25.7
Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 36.2
Min nTPM: 23.0
Sample A Female 34.9
Sample B Female 23.0
Sample C Male 31.2
Sample D Male 36.2
Superior colliculi
nTPM: 32.0
Samples: 4

Max nTPM: 39.7
Min nTPM: 17.9
Sample A Female 35.7
Sample B Female 17.9
Sample C Male 34.5
Sample D Male 39.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.3
Samples: 4

Max nTPM: 192.0
Min nTPM: 163.9
Sample A Male 192.0
Sample B Male 169.6
Sample C Female 163.9
Sample D Female 187.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
69080509 Antisense, RP_050324_02_B10, Mouse strain C57BL/6J (56 days, male) 16.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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