We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SERPINI1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SERPINI1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:138.8 nTPM
HPA:138.8 nTPM
GTEx:123.2 nTPM
FANTOM5:116.4 Scaled Tags Per Million
Pig:33.6 nTPM
Mouse:135.9 nTPM
Allen mouse:13.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 138.8
Sample id Sample description nTPM
Amygdala
nTPM: 107.1
2814 Male, age 76, right hemisphere 126.4
2514 Male, age 75, right hemisphere 108.5
1987 Female, age 91, left hemisphere 100.8
2517 Female, age 94, left hemisphere 100.7
2695 Female, age 67, right hemisphere 99.0
Basal amygdala
nTPM: 100.8
1955 Male, age 76, both hemispheres 119.3
2685 Female, age 94, left hemisphere 105.2
2110 Male, age 80, left hemisphere 101.2
2243 Female, age 91, right hemisphere 94.3
2609 Male, age 75, right hemisphere 94.3
2827 Female, age 67, right hemisphere 90.4
Central amygdala
nTPM: 104.2
1905 Male, age 76, both hemispheres 116.8
2239 Male, age 80, left hemisphere 104.9
2826 Female, age 94, left hemisphere 103.2
2701 Female, age 91, right hemisphere 101.8
2515 Male, age 75, right hemisphere 94.6
Corticomedial amygdala
nTPM: 104.0
2240 Male, age 76, both hemispheres 125.2
2429 Female, age 94, left hemisphere 114.0
2829 Male, age 80, left hemisphere 104.2
2428 Male, age 75, right hemisphere 95.4
2535 Female, age 67, right hemisphere 93.6
2242 Female, age 91, right hemisphere 91.8
Lateral amygdala
nTPM: 100.6
1883 Male, age 76, both hemispheres 116.3
2534 Female, age 94, left hemisphere 108.6
2516 Male, age 75, right hemisphere 100.5
2256 Male, age 80, left hemisphere 95.7
2255 Female, age 91, right hemisphere 94.5
2830 Female, age 67, right hemisphere 88.1
Stria terminalis, bed nucleus
nTPM: 138.8
1974 Female, age 91, both hemispheres 153.2
2486 Female, age 94, both hemispheres 151.4
2201 Male, age 74, unknown 111.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.2
Samples: 152

Max nTPM: 462.5
Min nTPM: 16.5
Std nTPM: 68.3
Median nTPM: 112.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 462.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 451.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 401.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 323.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 305.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 257.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 249.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 221.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 216.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 201.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 196.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 194.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 192.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 191.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 189.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 184.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 180.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 180.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 180.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 177.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 177.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 175.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 174.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 174.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 167.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 164.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 162.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 162.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 160.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 158.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 157.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 155.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 154.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 151.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 149.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 149.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 148.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 146.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 146.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 145.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 144.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 143.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 143.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 141.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 141.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 140.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 139.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 138.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 138.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 138.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 137.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 136.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 135.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 134.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 133.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 132.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 131.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 131.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 130.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 129.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 128.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 126.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 126.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 123.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 122.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 121.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 120.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 118.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 116.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 115.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 113.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 113.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 111.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 111.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 111.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 111.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 110.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 108.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 108.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 106.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 106.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 106.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 106.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 106.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 103.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 101.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 100.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 99.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 98.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 95.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 94.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 93.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 92.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 89.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 89.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 88.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 88.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 86.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 85.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 84.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 80.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 79.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 77.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 74.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 74.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 74.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 73.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 71.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 69.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 69.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 68.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 68.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 65.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 63.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 63.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 62.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 62.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 60.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 59.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 59.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 58.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 56.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 56.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 53.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 51.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 49.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 47.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 39.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 38.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 38.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 38.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 30.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 21.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 116.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 116.4
FF:10151-102I7 76 years, female 116.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.6
Pig sample Sample description nTPM
Amygdala
nTPM: 33.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 27.6
Sample A Female 36.4
Sample B Female 28.4
Sample C Male 27.6
Sample D Male 42.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 135.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 135.9
Samples: 4

Max nTPM: 141.7
Min nTPM: 130.0
Sample A Male 141.4
Sample B Male 141.7
Sample C Female 130.4
Sample D Female 130.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.8
69117449 Antisense, RP_050330_01_B08, Mouse strain C57BL/6J (56 days, male) 17.6
963 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 10.0
964 Antisense, RP_040324_01_A03, Mouse strain C57BL/6J (56 days, male) 5.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.