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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:134.6 nTPM
HPA:134.6 nTPM
GTEx:232.8 nTPM
FANTOM5:119.5 Scaled Tags Per Million
Pig:12.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 134.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.7
1981 Female, age 72, midline 115.3
2816 Male, age 47, midline 114.4
2194 Female, age 79, both hemispheres 109.4
2048 Male, age 55, midline 107.7
2565 Male, age 75, midline 106.7
Cervical spinal cord, dorsal horn
nTPM: 134.6
2296 Male, age 66, both hemispheres 204.4
2069 Male, age 47, both hemispheres 140.8
2173 Female, age 72, unknown 124.9
1877 Male, age 55, unknown 121.9
2297 Male, age 75, both hemispheres 111.9
2721 Male, age 90, both hemispheres 103.8
Cervical spinal cord, ventral horn
nTPM: 113.5
2480 Male, age 75, both hemispheres 136.6
2068 Male, age 55, unknown 111.3
2098 Female, age 72, unknown 111.1
2820 Female, age 79, both hemispheres 109.6
2809 Male, age 90, both hemispheres 106.5
2295 Male, age 66, both hemispheres 106.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 232.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 232.8
Samples: 159

Max nTPM: 616.2
Min nTPM: 48.6
Std nTPM: 91.0
Median nTPM: 225.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 616.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 445.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 433.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 421.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 416.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 414.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 413.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 409.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 405.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 404.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 403.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 387.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 386.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 362.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 359.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 356.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 343.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 343.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 341.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 339.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 334.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 334.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 329.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 326.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 323.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 320.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 315.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 315.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 314.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 311.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 309.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 308.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 305.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 303.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 298.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 295.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 293.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 292.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 290.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 288.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 285.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 280.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 276.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 275.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 273.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 272.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 271.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 270.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 268.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 267.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 266.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 263.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 263.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 260.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 259.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 258.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 256.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 255.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 255.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 255.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 253.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 252.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 250.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 249.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 249.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 248.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 246.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 245.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 245.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 242.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 237.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 236.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 234.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 234.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 233.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 229.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 227.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 226.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 225.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 224.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 221.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 220.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 219.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 219.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 219.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 218.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 214.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 211.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 211.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 210.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 205.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 202.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 202.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 197.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 195.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 190.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 190.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 188.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 187.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 184.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 184.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 183.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 183.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 182.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 181.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 181.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 180.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 178.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 178.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 178.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 174.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 169.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 169.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 168.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 168.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 164.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 162.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 158.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 158.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 157.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 157.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 156.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 156.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 153.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 153.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 153.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 153.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 149.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 148.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 144.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 142.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 141.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 138.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 135.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 135.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 135.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 135.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 134.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 131.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 125.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 125.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 121.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 121.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 121.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 119.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 114.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 105.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 103.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 102.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 95.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 94.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 90.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 72.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 68.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 48.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 119.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.5
FF:10159-103A6 76 years, female 142.9
FF:10181-103D1 60 years, female 96.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 12.9
Samples: 4

Max nTPM: 19.8
Min nTPM: 5.0
Sample A Female 19.8
Sample B Female 11.9
Sample C Male 5.0
Sample D Male 14.7
Ventral spinal cord
nTPM: 8.9
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.8
Sample A Female 8.6
Sample B Female 9.9
Sample C Male 7.8
Sample D Male 9.4

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