MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.1 nTPM
HPA:59.1 nTPM
GTEx:71.3 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:87.0 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2019 Male, age 18, unknown 55.9
1827 Male, age 72, unknown 55.7
2666 Male, age 74, left hemisphere 55.7
1870 Female, age 42, unknown 55.6
2411 Female, age 72, unknown 55.5
2219 Male, age 76, both hemispheres 55.4
1830 Male, age 51, unknown 54.1
1833 Male, age 53, unknown 54.0
2586 Male, age 75, left hemisphere 53.8
2828 Female, age 72, unknown 51.9
Dorsal raphe nucleus
nTPM: 54.9
1828 Male, age 53, unknown 56.8
2750 Male, age 76, both hemispheres 55.4
2298 Female, age 72, unknown 54.9
2047 Male, age 72, unknown 54.6
2016 Female, age 72, unknown 53.0
Inferior colliculus
nTPM: 55.6
2097 Female, age 72, unknown 56.7
1890 Male, age 53, unknown 56.1
2849 Male, age 72, unknown 54.9
1848 Female, age 42, unknown 54.8
Median raphe nucleus
nTPM: 55.1
2220 Male, age 76, midline 55.1
Pedunculopontine tegmental nucleus
nTPM: 56.7
1921 Female, age 85, both hemispheres 57.2
2334 Male, age 80, both hemispheres 57.0
2338 Male, age 61, both hemispheres 56.0
Periaquaductal grey, anterior
nTPM: 55.0
1947 Male, age 18, unknown 56.4
2502 Female, age 75, unknown 55.2
1795 Male, age 51, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 54.4
1840 Male, age 53, unknown 55.6
1831 Male, age 72, unknown 54.5
2850 Male, age 76, both hemispheres 54.3
2464 Female, age 72, unknown 53.2
Periaquaductal grey, lateral
nTPM: 52.7
2053 Male, age 18, unknown 53.4
2272 Male, age 74, both hemispheres 53.4
2140 Male, age 76, both hemispheres 51.3
Pretectal area
nTPM: 56.4
1944 Female, age 72, unknown 62.3
1817 Female, age 42, unknown 60.1
1816 Male, age 51, unknown 59.4
2007 Male, age 72, unknown 59.4
1815 Male, age 53, unknown 58.0
2667 Female, age 75, unknown 55.2
2224 Female, age 72, unknown 54.4
2825 Male, age 18, unknown 53.6
2273 Male, age 74, both hemispheres 53.1
2407 Male, age 75, both hemispheres 52.9
2316 Male, age 76, right hemisphere 52.0
Red nucleus
nTPM: 55.5
1821 Female, age 72, unknown 58.6
2725 Female, age 75, unknown 57.4
1954 Female, age 42, unknown 56.4
2588 Male, age 74, left hemisphere 55.7
1865 Male, age 51, unknown 55.6
2584 Male, age 75, left hemisphere 55.4
2785 Male, age 18, unknown 54.9
2503 Female, age 72, unknown 54.8
1904 Male, age 53, unknown 54.4
2769 Male, age 72, unknown 54.3
2227 Male, age 72, unknown 54.2
2823 Male, age 76, right hemisphere 53.8
Substantia nigra
nTPM: 59.1
1916 Female, age 42, unknown 62.1
2241 Male, age 72, unknown 61.2
1851 Male, age 51, unknown 60.6
1941 Male, age 53, unknown 60.6
1889 Female, age 72, unknown 60.2
2409 Female, age 72, unknown 59.9
2699 Male, age 18, unknown 58.4
2665 Male, age 74, both hemispheres 58.1
2590 Female, age 75, unknown 55.4
2583 Male, age 75, right hemisphere 55.0
Superior colliculus
nTPM: 55.3
2668 Female, age 75, unknown 57.4
2087 Female, age 72, unknown 57.2
1895 Male, age 76, right hemisphere 57.1
2587 Male, age 74, left hemisphere 56.2
1796 Male, age 53, unknown 55.4
2261 Male, age 18, unknown 55.3
1913 Female, age 42, unknown 55.1
1839 Male, age 51, unknown 54.2
1995 Male, age 72, unknown 53.1
2664 Male, age 75, both hemispheres 52.3
Ventral tegmental area
nTPM: 56.4
2218 Male, age 76, both hemispheres 59.2
1915 Female, age 42, unknown 57.8
2410 Female, age 72, unknown 57.5
2223 Female, age 72, unknown 57.0
1942 Male, age 51, unknown 55.2
2021 Male, age 53, unknown 51.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.3
Samples: 139

Max nTPM: 118.4
Min nTPM: 31.9
Std nTPM: 15.9
Median nTPM: 68.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 118.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 111.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 111.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 110.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 107.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 107.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 106.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 99.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.2
FF:10158-103A5 76 years, female 13.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.1
Pig sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 42.2
Min nTPM: 38.7
Sample A Female 42.2
Sample B Female 39.0
Sample C Male 38.7
Sample D Male 40.6
Periaqueductal gray
nTPM: 33.1
Samples: 3

Max nTPM: 35.4
Min nTPM: 31.0
Sample B Female 31.0
Sample C Male 35.4
Sample D Male 33.0
Substantia nigra
nTPM: 37.8
Samples: 4

Max nTPM: 47.8
Min nTPM: 31.8
Sample A Female 47.8
Sample B Female 36.0
Sample C Male 35.7
Sample D Male 31.8
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 42.4
Min nTPM: 28.5
Sample A Female 42.1
Sample B Female 28.5
Sample C Male 42.4
Sample D Male 36.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.0
Samples: 4

Max nTPM: 92.0
Min nTPM: 81.4
Sample A Male 92.0
Sample B Male 81.4
Sample C Female 88.8
Sample D Female 85.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69014536 Antisense, RP_050310_01_C09, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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