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RPL9
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
22.107
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:377.9 nTPM
HPA:377.9 nTPM
GTEx:1349.5 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:306.9 nTPM
Mouse:0.0 nTPM

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA003372
Amygdala mean intensity 22.107
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 7.934
Basal medial amygdaloid nucleus 10.634
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 16.661
Cortical amygdala 17.734
Central amygdala 19.028
Medial amygdaloid nucleus 22.107

AMYGDALA - HPA Brain RNA-seq
Max nTPM 377.9
Sample id Sample description nTPM
Amygdala
nTPM: 377.9
2695 Female, age 67, right hemisphere 384.4
2514 Male, age 75, right hemisphere 384.3
1987 Female, age 91, left hemisphere 375.9
2517 Female, age 94, left hemisphere 374.3
2814 Male, age 76, right hemisphere 370.9
Basal amygdala
nTPM: 371.0
2827 Female, age 67, right hemisphere 383.9
2110 Male, age 80, left hemisphere 381.0
2609 Male, age 75, right hemisphere 374.3
2685 Female, age 94, left hemisphere 369.8
1955 Male, age 76, both hemispheres 359.4
2243 Female, age 91, right hemisphere 357.4
Central amygdala
nTPM: 372.6
2826 Female, age 94, left hemisphere 397.8
2515 Male, age 75, right hemisphere 380.8
1905 Male, age 76, both hemispheres 362.9
2701 Female, age 91, right hemisphere 362.2
2239 Male, age 80, left hemisphere 359.5
Corticomedial amygdala
nTPM: 365.7
2428 Male, age 75, right hemisphere 378.3
2829 Male, age 80, left hemisphere 375.1
2429 Female, age 94, left hemisphere 365.1
2240 Male, age 76, both hemispheres 361.2
2242 Female, age 91, right hemisphere 360.4
2535 Female, age 67, right hemisphere 354.1
Lateral amygdala
nTPM: 376.4
2830 Female, age 67, right hemisphere 403.7
2516 Male, age 75, right hemisphere 391.8
2534 Female, age 94, left hemisphere 378.2
1883 Male, age 76, both hemispheres 365.3
2256 Male, age 80, left hemisphere 360.8
2255 Female, age 91, right hemisphere 358.8
Stria terminalis, bed nucleus
nTPM: 362.1
1974 Female, age 91, both hemispheres 371.5
2201 Male, age 74, unknown 358.0
2486 Female, age 94, both hemispheres 356.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1349.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1349.5
Samples: 152

Max nTPM: 4669.4
Min nTPM: 506.3
Std nTPM: 650.7
Median nTPM: 1209.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4669.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4658.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3803.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3355.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3033.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2741.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2573.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2539.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2456.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2322.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2257.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2169.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2169.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2104.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2087.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1971.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1908.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1878.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1863.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1828.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1816.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1799.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1798.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1738.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1731.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1724.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1688.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1660.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1660.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1649.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1639.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1613.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1601.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1580.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1575.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1575.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1566.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1527.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1525.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1520.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1493.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1492.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1470.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1456.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1452.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1450.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1444.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1444.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1437.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1430.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1398.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1386.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1382.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1380.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1375.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1355.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1345.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1344.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1338.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1334.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1324.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1324.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1320.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1298.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1297.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1283.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1274.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1269.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1268.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1250.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1248.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1239.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1238.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1231.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1214.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1211.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1207.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1201.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1187.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1184.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1177.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1156.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1152.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1152.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1149.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1145.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1144.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1140.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1134.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1127.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1126.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1123.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1122.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1116.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1108.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1081.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1080.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1080.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1076.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1073.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1069.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1067.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1051.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1051.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1041.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1031.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1018.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1005.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 998.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 991.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 982.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 981.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 972.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 966.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 952.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 947.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 943.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 935.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 920.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 911.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 896.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 894.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 892.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 884.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 878.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 871.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 870.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 845.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 845.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 844.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 828.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 818.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 807.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 797.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 796.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 789.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 781.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 769.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 763.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 761.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 755.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 700.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 657.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 649.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 646.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 634.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 624.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 606.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 595.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 562.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 551.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 506.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 16.8
FF:10151-102I7 76 years, female 16.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 306.9
Pig sample Sample description nTPM
Amygdala
nTPM: 306.9
Samples: 4

Max nTPM: 390.3
Min nTPM: 180.5
Sample A Female 368.6
Sample B Female 390.3
Sample C Male 288.2
Sample D Male 180.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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