MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:381.1 nTPM
HPA:381.1 nTPM
GTEx:1234.1 nTPM
FANTOM5:18.8 Scaled Tags Per Million
Pig:433.8 nTPM
Mouse:0.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 381.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 369.2
2411 Female, age 72, unknown 381.7
2666 Male, age 74, left hemisphere 380.4
1870 Female, age 42, unknown 376.3
1827 Male, age 72, unknown 369.4
2828 Female, age 72, unknown 368.4
2586 Male, age 75, left hemisphere 368.1
2019 Male, age 18, unknown 366.8
1830 Male, age 51, unknown 363.3
2219 Male, age 76, both hemispheres 362.5
1833 Male, age 53, unknown 355.4
Dorsal raphe nucleus
nTPM: 367.6
2298 Female, age 72, unknown 376.2
2016 Female, age 72, unknown 370.5
2750 Male, age 76, both hemispheres 368.1
2047 Male, age 72, unknown 364.5
1828 Male, age 53, unknown 358.9
Inferior colliculus
nTPM: 372.2
2097 Female, age 72, unknown 386.1
2849 Male, age 72, unknown 369.0
1890 Male, age 53, unknown 367.2
1848 Female, age 42, unknown 366.7
Median raphe nucleus
nTPM: 364.5
2220 Male, age 76, midline 364.5
Pedunculopontine tegmental nucleus
nTPM: 370.3
2338 Male, age 61, both hemispheres 373.2
2334 Male, age 80, both hemispheres 372.0
1921 Female, age 85, both hemispheres 365.8
Periaquaductal grey, anterior
nTPM: 371.6
2502 Female, age 75, unknown 380.6
1795 Male, age 51, unknown 368.6
1947 Male, age 18, unknown 365.7
Periaquaductal grey, dorsal
nTPM: 368.1
2464 Female, age 72, unknown 375.5
1840 Male, age 53, unknown 367.8
1831 Male, age 72, unknown 366.1
2850 Male, age 76, both hemispheres 363.0
Periaquaductal grey, lateral
nTPM: 365.1
2053 Male, age 18, unknown 370.4
2272 Male, age 74, both hemispheres 362.9
2140 Male, age 76, both hemispheres 362.0
Pretectal area
nTPM: 368.0
1816 Male, age 51, unknown 378.1
2316 Male, age 76, right hemisphere 372.0
2224 Female, age 72, unknown 370.2
2273 Male, age 74, both hemispheres 370.2
2825 Male, age 18, unknown 369.3
1817 Female, age 42, unknown 367.3
1815 Male, age 53, unknown 364.9
2007 Male, age 72, unknown 364.9
2667 Female, age 75, unknown 364.1
1944 Female, age 72, unknown 363.8
2407 Male, age 75, both hemispheres 362.7
Red nucleus
nTPM: 370.1
1821 Female, age 72, unknown 379.4
2503 Female, age 72, unknown 376.1
1865 Male, age 51, unknown 373.7
2769 Male, age 72, unknown 372.5
2584 Male, age 75, left hemisphere 371.5
2227 Male, age 72, unknown 370.8
2785 Male, age 18, unknown 369.2
1954 Female, age 42, unknown 368.3
2725 Female, age 75, unknown 367.2
2588 Male, age 74, left hemisphere 364.1
2823 Male, age 76, right hemisphere 364.0
1904 Male, age 53, unknown 363.9
Substantia nigra
nTPM: 373.6
2241 Male, age 72, unknown 385.4
1851 Male, age 51, unknown 384.7
2665 Male, age 74, both hemispheres 379.4
2699 Male, age 18, unknown 379.0
2409 Female, age 72, unknown 375.8
1916 Female, age 42, unknown 371.9
1889 Female, age 72, unknown 368.8
2590 Female, age 75, unknown 368.0
2583 Male, age 75, right hemisphere 363.7
1941 Male, age 53, unknown 359.1
Superior colliculus
nTPM: 373.5
1796 Male, age 53, unknown 396.4
2587 Male, age 74, left hemisphere 386.0
2668 Female, age 75, unknown 376.2
1913 Female, age 42, unknown 371.5
1895 Male, age 76, right hemisphere 371.1
1995 Male, age 72, unknown 368.2
1839 Male, age 51, unknown 367.7
2261 Male, age 18, unknown 367.7
2664 Male, age 75, both hemispheres 366.0
2087 Female, age 72, unknown 364.7
Ventral tegmental area
nTPM: 381.1
2021 Male, age 53, unknown 445.4
1915 Female, age 42, unknown 377.6
2223 Female, age 72, unknown 375.9
1942 Male, age 51, unknown 365.4
2218 Male, age 76, both hemispheres 362.4
2410 Female, age 72, unknown 359.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1234.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1234.1
Samples: 139

Max nTPM: 4553.9
Min nTPM: 494.3
Std nTPM: 586.5
Median nTPM: 1110.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4553.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3473.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2878.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2825.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2678.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2592.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2520.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2332.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2307.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2221.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2150.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.8
FF:10158-103A5 76 years, female 18.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 433.8
Pig sample Sample description nTPM
Midbrain
nTPM: 404.4
Samples: 4

Max nTPM: 504.0
Min nTPM: 308.2
Sample A Female 504.0
Sample B Female 481.0
Sample C Male 324.2
Sample D Male 308.2
Periaqueductal gray
nTPM: 339.3
Samples: 3

Max nTPM: 366.6
Min nTPM: 319.0
Sample B Female 366.6
Sample C Male 332.4
Sample D Male 319.0
Substantia nigra
nTPM: 422.5
Samples: 4

Max nTPM: 556.2
Min nTPM: 321.4
Sample A Female 556.2
Sample B Female 470.5
Sample C Male 341.9
Sample D Male 321.4
Superior colliculi
nTPM: 433.8
Samples: 4

Max nTPM: 520.7
Min nTPM: 358.1
Sample A Female 520.7
Sample B Female 473.2
Sample C Male 383.3
Sample D Male 358.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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