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RPL9
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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68.173
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:382.5 nTPM
HPA:382.5 nTPM
FANTOM5:31.0 Scaled Tags Per Million
Pig:441.8 nTPM

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA003372
Pons mean intensity 68.173
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus -
Parabrachial nucleus -
Principle sensory trigeminal nucleus -
Locus coeruleus 68.173
Pontine nucleus 15.911
Vestibular nucleus 16.537
Pontine reticular nucleus, oral 9.128
Lateral lemniscus 12.824
Superior paraolivary nucleus 3.954

PONS - HPA Brain RNA-seq
Max nTPM 382.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 374.9
2090 Male, age 80, both hemispheres 381.9
2188 Female, age 91, both hemispheres 381.2
1984 Male, age 76, both hemispheres 372.6
2301 Female, age 85, both hemispheres 364.0
Dorsal cochlear nucleus
nTPM: 372.3
2802 Male, age 74, right hemisphere 380.4
2187 Female, age 91, both hemispheres 374.7
2378 Male, age 80, both hemispheres 372.0
2370 Male, age 61, both hemispheres 370.4
2058 Male, age 76, both hemispheres 364.1
Dorsal tegmental nucleus
nTPM: 368.3
2326 Male, age 74, both hemispheres 374.1
2083 Male, age 80, both hemispheres 372.3
1936 Male, age 76, left hemisphere 365.6
2358 Male, age 61, both hemispheres 361.1
Dorsolateral tegmental area
nTPM: 375.4
2654 Male, age 80, both hemispheres 390.2
2751 Female, age 85, both hemispheres 377.4
2337 Male, age 61, both hemispheres 373.3
2360 Male, age 74, both hemispheres 371.0
2141 Male, age 76, both hemispheres 365.1
Kolliker-Fuse nucleus
nTPM: 373.8
2315 Male, age 76, right hemisphere 377.5
2163 Male, age 80, both hemispheres 372.4
2793 Female, age 91, left hemisphere 371.3
Lateral lemniscal nuclei
nTPM: 367.1
2169 Male, age 76, both hemispheres 372.1
2746 Female, age 85, left hemisphere 370.1
2036 Male, age 80, both hemispheres 367.7
2453 Male, age 74, right hemisphere 363.0
2320 Female, age 91, left hemisphere 362.8
Lateral parabrachial nucleus
nTPM: 372.6
2792 Male, age 76, both hemispheres 380.6
2013 Male, age 80, both hemispheres 374.1
2139 Female, age 85, right hemisphere 372.0
2790 Male, age 61, both hemispheres 363.7
Lateral vestibular nucleus
nTPM: 365.1
2311 Male, age 80, both hemispheres 367.4
2184 Male, age 76, both hemispheres 362.7
Locus coeruleus
nTPM: 369.2
2014 Male, age 55, unknown 387.0
2317 Female, age 72, unknown 371.5
2123 Female, age 91, both hemispheres 370.1
2788 Male, age 74, unknown 367.8
2720 Male, age 74, both hemispheres 364.1
2162 Male, age 80, both hemispheres 363.4
1980 Male, age 76, both hemispheres 360.1
Medial olivary nucleus
nTPM: 379.4
1943 Male, age 61, both hemispheres 389.9
2138 Female, age 91, both hemispheres 383.5
1962 Male, age 76, both hemispheres 380.9
2851 Male, age 80, both hemispheres 363.3
Medial parabrachial nucleus
nTPM: 370.9
2170 Female, age 91, both hemispheres 384.2
2463 Female, age 85, right hemisphere 374.5
2786 Male, age 76, both hemispheres 366.1
2854 Male, age 80, both hemispheres 365.9
2156 Male, age 61, both hemispheres 363.6
Medial periolivary nuclei
nTPM: 372.6
2081 Male, age 80, both hemispheres 383.0
2063 Male, age 76, both hemispheres 379.0
2791 Male, age 74, right hemisphere 372.5
2458 Female, age 91, both hemispheres 366.4
2171 Female, age 85, both hemispheres 362.2
Motor facial nucleus
nTPM: 368.0
2062 Male, age 76, both hemispheres 375.0
2795 Female, age 91, both hemispheres 372.6
2126 Male, age 61, both hemispheres 370.1
2365 Male, age 74, right hemisphere 367.0
2697 Female, age 85, both hemispheres 363.9
2327 Male, age 80, both hemispheres 359.6
Motor trigeminal nucleus
nTPM: 370.0
2079 Male, age 80, both hemispheres 373.6
2335 Male, age 61, both hemispheres 370.2
2309 Male, age 76, both hemispheres 369.7
2560 Male, age 74, both hemispheres 369.6
2321 Female, age 91, both hemispheres 367.0
Nuclei of the trapezoid body
nTPM: 368.6
1983 Male, age 76, both hemispheres 385.2
2166 Male, age 80, both hemispheres 366.4
2159 Male, age 61, both hemispheres 365.1
2368 Female, age 91, both hemispheres 364.0
2735 Female, age 85, both hemispheres 362.3
Paramedian reticular nucleus
nTPM: 374.8
2057 Male, age 80, both hemispheres 378.5
2052 Male, age 76, both hemispheres 376.6
2050 Female, age 85, both hemispheres 373.9
2313 Male, age 61, both hemispheres 370.2
Pontine nuclei
nTPM: 373.6
2109 Female, age 72, unknown 382.6
1968 Male, age 76, left hemisphere 376.4
1863 Male, age 55, unknown 375.5
2319 Female, age 91, both hemispheres 373.0
2454 Male, age 74, left hemisphere 372.3
2115 Male, age 80, left hemisphere 371.0
2727 Male, age 61, right hemisphere 370.4
2787 Female, age 85, both hemispheres 367.7
Pontine raphe nucleus
nTPM: 370.6
2122 Female, age 85, midline 372.4
2853 Male, age 76, midline 368.9
Posteroventral cochlear nucleus
nTPM: 382.5
2341 Male, age 80, both hemispheres 402.4
2135 Female, age 91, both hemispheres 387.1
2371 Male, age 61, both hemispheres 378.7
2752 Female, age 85, both hemispheres 374.1
2070 Male, age 76, both hemispheres 369.9
Principal sensory trigeminal nucleus
nTPM: 366.2
2008 Male, age 80, left hemisphere 368.1
2158 Male, age 61, both hemispheres 367.6
2367 Female, age 91, left hemisphere 367.4
2324 Male, age 76, both hemispheres 361.6
Reticular pontine nucleus, caudal
nTPM: 373.1
2559 Male, age 74, both hemispheres 386.2
2092 Male, age 76, both hemispheres 376.0
2457 Female, age 91, both hemispheres 371.2
2332 Male, age 80, right hemisphere 359.1
Reticular pontine nucleus, oral
nTPM: 369.9
2366 Female, age 91, both hemispheres 373.8
2012 Female, age 85, both hemispheres 371.4
2167 Male, age 76, both hemispheres 369.8
2361 Male, age 74, both hemispheres 369.1
1939 Male, age 80, both hemispheres 365.7
Reticulotegmental nucleus
nTPM: 367.2
2452 Male, age 74, both hemispheres 371.4
2322 Female, age 91, both hemispheres 368.7
2325 Male, age 76, both hemispheres 366.2
2333 Male, age 80, both hemispheres 362.6
Spinal trigeminal nucleus, oral
nTPM: 367.1
1978 Male, age 76, both hemispheres 369.0
2737 Female, age 85, both hemispheres 366.5
2164 Male, age 80, both hemispheres 365.7
Subcoeruleus area
nTPM: 371.9
2451 Male, age 74, both hemispheres 382.3
2369 Female, age 85, left hemisphere 379.8
2089 Male, age 76, left hemisphere 366.8
2323 Female, age 91, left hemisphere 366.6
1958 Male, age 80, both hemispheres 363.8
Superior olive
nTPM: 369.2
2020 Male, age 76, both hemispheres 379.4
2364 Male, age 74, right hemisphere 375.7
1875 Female, age 85, both hemispheres 370.9
2561 Female, age 91, both hemispheres 367.0
2329 Male, age 80, right hemisphere 353.2
Superior vestibular nucleus
nTPM: 372.7
2015 Male, age 80, both hemispheres 375.3
2383 Male, age 74, both hemispheres 374.9
2061 Male, age 76, both hemispheres 367.9
Ventral periolivary nuclei
nTPM: 366.8
2023 Male, age 76, both hemispheres 378.2
2794 Female, age 91, left hemisphere 368.5
2165 Male, age 80, both hemispheres 364.7
2130 Female, age 85, both hemispheres 355.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 367.6
1959 Male, age 76, both hemispheres 370.4
2161 Male, age 80, both hemispheres 369.6
2840 Female, age 85, both hemispheres 368.1
2359 Male, age 61, both hemispheres 367.3
2456 Female, age 91, both hemispheres 367.0
2449 Male, age 74, both hemispheres 363.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 31.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 24.6
FF:10182-103D2 60 years, female 24.8
FF:10165-103B3 76 years, female 24.5
Pons
Scaled Tags Per Million: 31.0
FF:10033-101E6 18-54 years, mixed 31.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 441.8
Pig sample Sample description nTPM
Pons
nTPM: 441.8
Samples: 4

Max nTPM: 542.6
Min nTPM: 343.1
Sample A Female 461.2
Sample B Female 343.1
Sample C Male 542.6
Sample D Male 420.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.