BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:65.5 nTPM
HPA:65.5 nTPM
GTEx:52.4 nTPM
FANTOM5:173.2 Scaled Tags Per Million
Pig:65.7 nTPM
Mouse:85.4 nTPM
Allen mouse:8.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026828Antibody HPA051520Antibody CAB009748
Glial cells LowMediumNot detected
Neuronal cells MediumMediumLow







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 65.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.9
2288 Male, age 75, left hemisphere 58.8
2481 Female, age 94, left hemisphere 56.7
1857 Female, age 85, left hemisphere 56.4
2846 Female, age 79, unknown 56.2
1854 Male, age 80, left hemisphere 55.8
1781 Male, age 74, unknown 54.8
2290 Female, age 72, unknown 52.8
2289 Male, age 61, right hemisphere 47.7
Claustrum
nTPM: 53.7
1956 Male, age 74, unknown 57.0
2198 Male, age 80, both hemispheres 56.9
2292 Female, age 85, both hemispheres 56.8
2196 Female, age 79, unknown 56.1
2392 Female, age 94, both hemispheres 55.0
2491 Male, age 75, both hemispheres 53.0
2568 Male, age 61, both hemispheres 51.8
2284 Female, age 91, both hemispheres 50.0
2645 Female, age 72, unknown 46.5
Globus pallidus, externus
nTPM: 62.3
1996 Male, age 80, right hemisphere 72.7
2772 Female, age 79, unknown 69.4
2395 Male, age 75, both hemispheres 68.7
2646 Male, age 61, right hemisphere 52.2
2567 Female, age 72, unknown 48.5
Globus pallidus, internus
nTPM: 65.5
2287 Male, age 75, right hemisphere 75.0
2778 Female, age 91, both hemispheres 72.3
2037 Male, age 80, right hemisphere 68.0
2111 Female, age 85, right hemisphere 64.5
1818 Male, age 74, unknown 64.1
2483 Female, age 94, right hemisphere 59.9
2566 Female, age 72, unknown 55.1
Nucleus accumbens
nTPM: 57.7
2391 Female, age 94, left hemisphere 62.7
2286 Male, age 75, left hemisphere 60.4
1856 Female, age 91, right hemisphere 58.7
2698 Female, age 72, unknown 58.3
1806 Female, age 85, left hemisphere 58.1
2732 Male, age 80, right hemisphere 57.8
1783 Male, age 74, unknown 54.0
2824 Male, age 61, right hemisphere 51.4
Nucleus basalis of Meynert
nTPM: 54.8
2821 Male, age 75, both hemispheres 58.5
2393 Male, age 80, right hemisphere 57.1
2484 Female, age 94, left hemisphere 52.8
2569 Male, age 61, both hemispheres 50.8
Nucleus of the diagonal band
nTPM: 54.5
1812 Female, age 91, both hemispheres 59.1
1979 Male, age 74, unknown 55.3
2775 Male, age 80, right hemisphere 53.6
2029 Male, age 61, right hemisphere 53.4
2195 Female, age 85, both hemispheres 51.2
Olfactory tubercle
nTPM: 52.2
1846 Male, age 80, right hemisphere 56.4
1998 Female, age 91, both hemispheres 52.5
2487 Female, age 94, left hemisphere 50.1
2856 Male, age 75, right hemisphere 49.9
Putamen
nTPM: 53.8
2482 Female, age 94, left hemisphere 63.4
1937 Female, age 91, right hemisphere 55.9
2466 Female, age 79, unknown 55.9
1829 Male, age 74, unknown 52.9
1838 Male, age 80, right hemisphere 52.0
2489 Female, age 72, unknown 48.7
2647 Male, age 75, left hemisphere 47.8
Septal nuclei
nTPM: 55.0
2199 Male, age 80, right hemisphere 59.1
2031 Female, age 72, unknown 57.9
2394 Male, age 61, left hemisphere 56.4
2009 Female, age 91, both hemispheres 54.7
2629 Female, age 94, right hemisphere 53.9
2059 Female, age 85, both hemispheres 51.8
1960 Male, age 74, unknown 51.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.7
Samples: 246

Max nTPM: 77.2
Min nTPM: 32.4
Std nTPM: 7.2
Median nTPM: 49.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 77.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 73.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 72.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 70.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 69.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 68.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 66.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 65.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 65.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 64.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.5
Samples: 246

Max nTPM: 83.3
Min nTPM: 29.3
Std nTPM: 8.3
Median nTPM: 48.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 83.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 81.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 78.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 71.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 69.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 67.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 65.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 65.3
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 64.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 63.6
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 62.9
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Brain - Putamen (basal ganglia)
Average nTPM: 52.4
Samples: 205

Max nTPM: 112.0
Min nTPM: 35.1
Std nTPM: 8.9
Median nTPM: 51.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 112.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 83.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 71.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 69.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 69.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 69.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 69.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 68.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 67.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 67.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 67.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 140.8
FF:10164-103B2 76 years, female 140.8
Globus pallidus
Scaled Tags Per Million: 173.2
FF:10161-103A8 76 years, female 175.2
FF:10175-103C4 60 years, female 171.2
Nucleus accumbens
Scaled Tags Per Million: 149.9
FF:10037-101F1 23-56 years, mixed 149.9
Putamen
Scaled Tags Per Million: 101.2
FF:10176-103C5 60 years, female 101.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 65.7
Pig sample Sample description nTPM
Caudate
nTPM: 60.8
Samples: 4

Max nTPM: 70.2
Min nTPM: 53.0
Sample A Female 53.0
Sample B Female 62.0
Sample C Male 70.2
Sample D Male 58.1
Putamen
nTPM: 63.4
Samples: 4

Max nTPM: 80.1
Min nTPM: 50.7
Sample A Female 55.8
Sample B Female 50.7
Sample C Male 80.1
Sample D Male 67.1
Septum
nTPM: 65.7
Samples: 4

Max nTPM: 77.5
Min nTPM: 59.5
Sample A Female 64.5
Sample B Female 59.5
Sample C Male 77.5
Sample D Male 61.4
Ventral pallidum
nTPM: 62.1
Samples: 4

Max nTPM: 67.4
Min nTPM: 59.3
Sample A Female 59.3
Sample B Female 59.3
Sample C Male 67.4
Sample D Male 62.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 85.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.6
Samples: 4

Max nTPM: 74.3
Min nTPM: 63.2
Sample A Male 63.8
Sample B Male 63.2
Sample C Female 69.1
Sample D Female 74.3
Septum
nTPM: 85.4
Samples: 4

Max nTPM: 92.3
Min nTPM: 77.2
Sample A Male 80.5
Sample B Male 92.3
Sample C Female 91.7
Sample D Female 77.2
Ventral forebrain
nTPM: 74.3
Samples: 4

Max nTPM: 85.4
Min nTPM: 65.7
Sample A Male 65.7
Sample B Male 72.3
Sample C Female 85.4
Sample D Female 73.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.9
75774675 Antisense, RP_060530_01_C12, Mouse strain C57BL/6J (56 days, male) 10.7
638734 Antisense, RP_040831_02_F02, Mouse strain C57BL/6J (56 days, male) 5.1
Pallidum
Expression energy: 8.3
75774675 Antisense, RP_060530_01_C12, Mouse strain C57BL/6J (56 days, male) 10.7
638734 Antisense, RP_040831_02_F02, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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