MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:65.8 nTPM
HPA:65.8 nTPM
GTEx:57.9 nTPM
FANTOM5:200.5 Scaled Tags Per Million
Pig:72.7 nTPM
Mouse:60.2 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2411 Female, age 72, unknown 66.8
1870 Female, age 42, unknown 64.3
1827 Male, age 72, unknown 61.4
1833 Male, age 53, unknown 60.2
2019 Male, age 18, unknown 59.2
1830 Male, age 51, unknown 58.8
2828 Female, age 72, unknown 58.1
2666 Male, age 74, left hemisphere 57.1
2219 Male, age 76, both hemispheres 52.9
2586 Male, age 75, left hemisphere 51.4
Dorsal raphe nucleus
nTPM: 62.9
2298 Female, age 72, unknown 71.7
2750 Male, age 76, both hemispheres 65.1
2047 Male, age 72, unknown 59.6
2016 Female, age 72, unknown 59.3
1828 Male, age 53, unknown 58.9
Inferior colliculus
nTPM: 57.2
2097 Female, age 72, unknown 61.5
1848 Female, age 42, unknown 57.5
1890 Male, age 53, unknown 55.8
2849 Male, age 72, unknown 54.0
Median raphe nucleus
nTPM: 65.8
2220 Male, age 76, midline 65.8
Pedunculopontine tegmental nucleus
nTPM: 63.0
2334 Male, age 80, both hemispheres 65.4
2338 Male, age 61, both hemispheres 62.5
1921 Female, age 85, both hemispheres 61.0
Periaquaductal grey, anterior
nTPM: 60.5
1947 Male, age 18, unknown 62.8
2502 Female, age 75, unknown 60.0
1795 Male, age 51, unknown 58.7
Periaquaductal grey, dorsal
nTPM: 58.5
2850 Male, age 76, both hemispheres 67.7
1840 Male, age 53, unknown 56.6
2464 Female, age 72, unknown 55.4
1831 Male, age 72, unknown 54.4
Periaquaductal grey, lateral
nTPM: 61.6
2272 Male, age 74, both hemispheres 64.8
2140 Male, age 76, both hemispheres 61.3
2053 Male, age 18, unknown 58.9
Pretectal area
nTPM: 59.8
2273 Male, age 74, both hemispheres 66.7
2224 Female, age 72, unknown 62.6
1815 Male, age 53, unknown 61.6
2667 Female, age 75, unknown 61.5
1817 Female, age 42, unknown 61.1
2007 Male, age 72, unknown 60.5
2316 Male, age 76, right hemisphere 59.5
1816 Male, age 51, unknown 59.1
1944 Female, age 72, unknown 57.8
2825 Male, age 18, unknown 57.5
2407 Male, age 75, both hemispheres 50.2
Red nucleus
nTPM: 59.7
1821 Female, age 72, unknown 66.5
1954 Female, age 42, unknown 63.8
1904 Male, age 53, unknown 63.7
2725 Female, age 75, unknown 63.0
1865 Male, age 51, unknown 62.5
2227 Male, age 72, unknown 59.5
2769 Male, age 72, unknown 59.3
2503 Female, age 72, unknown 59.1
2785 Male, age 18, unknown 58.8
2823 Male, age 76, right hemisphere 57.4
2588 Male, age 74, left hemisphere 51.9
2584 Male, age 75, left hemisphere 51.3
Substantia nigra
nTPM: 60.1
1916 Female, age 42, unknown 67.2
2241 Male, age 72, unknown 65.1
1851 Male, age 51, unknown 63.9
2409 Female, age 72, unknown 60.3
1941 Male, age 53, unknown 60.2
1889 Female, age 72, unknown 60.1
2699 Male, age 18, unknown 58.2
2590 Female, age 75, unknown 57.6
2665 Male, age 74, both hemispheres 54.8
2583 Male, age 75, right hemisphere 54.0
Superior colliculus
nTPM: 57.9
1913 Female, age 42, unknown 62.0
2261 Male, age 18, unknown 62.0
2587 Male, age 74, left hemisphere 61.2
1995 Male, age 72, unknown 59.9
1796 Male, age 53, unknown 59.7
1895 Male, age 76, right hemisphere 57.6
2087 Female, age 72, unknown 57.3
1839 Male, age 51, unknown 56.8
2668 Female, age 75, unknown 55.4
2664 Male, age 75, both hemispheres 47.1
Ventral tegmental area
nTPM: 62.1
2410 Female, age 72, unknown 68.9
2218 Male, age 76, both hemispheres 63.8
1915 Female, age 42, unknown 63.4
2223 Female, age 72, unknown 59.6
2021 Male, age 53, unknown 58.6
1942 Male, age 51, unknown 58.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.9
Samples: 139

Max nTPM: 95.1
Min nTPM: 31.7
Std nTPM: 12.5
Median nTPM: 55.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 95.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 94.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 89.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 85.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 84.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 84.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 83.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 82.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 81.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 80.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 79.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 200.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 200.5
FF:10158-103A5 76 years, female 200.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.7
Pig sample Sample description nTPM
Midbrain
nTPM: 70.9
Samples: 4

Max nTPM: 90.3
Min nTPM: 55.9
Sample A Female 90.3
Sample B Female 55.9
Sample C Male 73.7
Sample D Male 63.8
Periaqueductal gray
nTPM: 58.3
Samples: 3

Max nTPM: 65.6
Min nTPM: 53.9
Sample B Female 55.5
Sample C Male 65.6
Sample D Male 53.9
Substantia nigra
nTPM: 68.7
Samples: 4

Max nTPM: 78.8
Min nTPM: 61.0
Sample A Female 78.8
Sample B Female 61.2
Sample C Male 73.8
Sample D Male 61.0
Superior colliculi
nTPM: 72.7
Samples: 4

Max nTPM: 81.8
Min nTPM: 64.7
Sample A Female 77.6
Sample B Female 81.8
Sample C Male 66.8
Sample D Male 64.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.2
Samples: 4

Max nTPM: 62.1
Min nTPM: 57.8
Sample A Male 59.8
Sample B Male 57.8
Sample C Female 62.1
Sample D Female 61.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
75774675 Antisense, RP_060530_01_C12, Mouse strain C57BL/6J (56 days, male) 10.7
638734 Antisense, RP_040831_02_F02, Mouse strain C57BL/6J (56 days, male) 4.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.