BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:235.8 nTPM
HPA:235.8 nTPM
GTEx:53.4 nTPM
FANTOM5:761.7 Scaled Tags Per Million
Pig:43.8 nTPM
Mouse:7.1 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 235.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 69.2
2288 Male, age 75, left hemisphere 127.0
2846 Female, age 79, unknown 84.2
1854 Male, age 80, left hemisphere 70.5
2481 Female, age 94, left hemisphere 65.4
2290 Female, age 72, unknown 62.5
1781 Male, age 74, unknown 62.2
2289 Male, age 61, right hemisphere 45.5
1857 Female, age 85, left hemisphere 36.8
Claustrum
nTPM: 103.1
2292 Female, age 85, both hemispheres 168.3
1956 Male, age 74, unknown 150.1
2392 Female, age 94, both hemispheres 131.3
2196 Female, age 79, unknown 99.7
2198 Male, age 80, both hemispheres 86.5
2491 Male, age 75, both hemispheres 83.2
2568 Male, age 61, both hemispheres 78.6
2284 Female, age 91, both hemispheres 72.8
2645 Female, age 72, unknown 57.9
Globus pallidus, externus
nTPM: 189.8
1996 Male, age 80, right hemisphere 260.5
2772 Female, age 79, unknown 185.2
2646 Male, age 61, right hemisphere 182.3
2395 Male, age 75, both hemispheres 175.8
2567 Female, age 72, unknown 145.2
Globus pallidus, internus
nTPM: 235.8
2111 Female, age 85, right hemisphere 359.4
2778 Female, age 91, both hemispheres 296.8
2287 Male, age 75, right hemisphere 242.5
2037 Male, age 80, right hemisphere 233.7
1818 Male, age 74, unknown 213.0
2566 Female, age 72, unknown 191.6
2483 Female, age 94, right hemisphere 113.3
Nucleus accumbens
nTPM: 98.6
2391 Female, age 94, left hemisphere 186.0
2286 Male, age 75, left hemisphere 129.1
2698 Female, age 72, unknown 126.8
2732 Male, age 80, right hemisphere 112.8
1806 Female, age 85, left hemisphere 71.9
2824 Male, age 61, right hemisphere 64.0
1783 Male, age 74, unknown 61.0
1856 Female, age 91, right hemisphere 37.1
Nucleus basalis of Meynert
nTPM: 107.2
2569 Male, age 61, both hemispheres 154.9
2821 Male, age 75, both hemispheres 112.3
2393 Male, age 80, right hemisphere 90.7
2484 Female, age 94, left hemisphere 70.7
Nucleus of the diagonal band
nTPM: 31.1
1812 Female, age 91, both hemispheres 49.5
1979 Male, age 74, unknown 35.9
2029 Male, age 61, right hemisphere 29.2
2195 Female, age 85, both hemispheres 21.1
2775 Male, age 80, right hemisphere 19.9
Olfactory tubercle
nTPM: 40.2
2856 Male, age 75, right hemisphere 45.9
1998 Female, age 91, both hemispheres 42.7
2487 Female, age 94, left hemisphere 38.7
1846 Male, age 80, right hemisphere 33.7
Putamen
nTPM: 81.7
1829 Male, age 74, unknown 112.7
2482 Female, age 94, left hemisphere 104.7
2489 Female, age 72, unknown 89.9
1937 Female, age 91, right hemisphere 87.2
2647 Male, age 75, left hemisphere 74.4
2466 Female, age 79, unknown 71.1
1838 Male, age 80, right hemisphere 32.2
Septal nuclei
nTPM: 55.0
2394 Male, age 61, left hemisphere 126.4
2199 Male, age 80, right hemisphere 75.2
2629 Female, age 94, right hemisphere 49.3
2059 Female, age 85, both hemispheres 46.9
2009 Female, age 91, both hemispheres 38.5
2031 Female, age 72, unknown 30.4
1960 Male, age 74, unknown 18.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.4
Samples: 246

Max nTPM: 151.0
Min nTPM: 7.1
Std nTPM: 22.0
Median nTPM: 33.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 151.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 140.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 118.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 90.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 90.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 88.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 86.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 85.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 84.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 84.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 84.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 213.2
Min nTPM: 3.4
Std nTPM: 24.6
Median nTPM: 17.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 213.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 163.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 124.3
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 123.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 111.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 109.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 106.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 90.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 81.6
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 79.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 75.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 53.4
Samples: 205

Max nTPM: 226.9
Min nTPM: 10.6
Std nTPM: 27.4
Median nTPM: 49.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 226.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 138.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 133.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 125.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 121.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 120.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 112.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 111.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 111.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 110.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 110.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 761.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 122.1
FF:10164-103B2 76 years, female 122.1
Globus pallidus
Scaled Tags Per Million: 761.7
FF:10175-103C4 60 years, female 876.1
FF:10161-103A8 76 years, female 647.3
Nucleus accumbens
Scaled Tags Per Million: 287.8
FF:10037-101F1 23-56 years, mixed 287.8
Putamen
Scaled Tags Per Million: 154.2
FF:10176-103C5 60 years, female 154.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 43.8
Pig sample Sample description nTPM
Caudate
nTPM: 11.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 9.6
Sample A Female 14.8
Sample B Female 9.8
Sample C Male 11.1
Sample D Male 9.6
Putamen
nTPM: 43.8
Samples: 4

Max nTPM: 89.7
Min nTPM: 21.8
Sample A Female 89.7
Sample B Female 21.8
Sample C Male 25.4
Sample D Male 38.4
Septum
nTPM: 24.7
Samples: 4

Max nTPM: 29.0
Min nTPM: 19.7
Sample A Female 26.1
Sample B Female 19.7
Sample C Male 23.8
Sample D Male 29.0
Ventral pallidum
nTPM: 35.7
Samples: 4

Max nTPM: 49.4
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 30.7
Sample C Male 49.4
Sample D Male 48.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.1
Samples: 4

Max nTPM: 10.6
Min nTPM: 4.8
Sample A Male 6.6
Sample B Male 6.2
Sample C Female 10.6
Sample D Female 4.8
Septum
nTPM: 5.3
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.3
Sample A Male 4.3
Sample B Male 5.2
Sample C Female 4.6
Sample D Female 7.2
Ventral forebrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.7
Sample A Male 6.0
Sample B Male 6.1
Sample C Female 6.5
Sample D Female 5.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
583855 Antisense, RP_040831_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
583855 Antisense, RP_040831_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.