MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:158.6 nTPM
HPA:158.6 nTPM
GTEx:83.9 nTPM
FANTOM5:806.9 Scaled Tags Per Million
Pig:86.8 nTPM
Mouse:9.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.0
2411 Female, age 72, unknown 164.1
1830 Male, age 51, unknown 162.7
1870 Female, age 42, unknown 160.4
1833 Male, age 53, unknown 150.8
2019 Male, age 18, unknown 130.2
2828 Female, age 72, unknown 106.4
2219 Male, age 76, both hemispheres 85.2
1827 Male, age 72, unknown 83.0
2666 Male, age 74, left hemisphere 73.4
2586 Male, age 75, left hemisphere 43.3
Dorsal raphe nucleus
nTPM: 95.0
2750 Male, age 76, both hemispheres 187.1
2016 Female, age 72, unknown 102.6
1828 Male, age 53, unknown 81.9
2298 Female, age 72, unknown 52.8
2047 Male, age 72, unknown 50.8
Inferior colliculus
nTPM: 82.7
1848 Female, age 42, unknown 90.8
2849 Male, age 72, unknown 81.6
1890 Male, age 53, unknown 81.5
2097 Female, age 72, unknown 77.0
Median raphe nucleus
nTPM: 80.0
2220 Male, age 76, midline 80.0
Pedunculopontine tegmental nucleus
nTPM: 114.2
2334 Male, age 80, both hemispheres 120.9
2338 Male, age 61, both hemispheres 116.2
1921 Female, age 85, both hemispheres 105.7
Periaquaductal grey, anterior
nTPM: 62.5
1947 Male, age 18, unknown 72.1
2502 Female, age 75, unknown 68.4
1795 Male, age 51, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 59.4
2464 Female, age 72, unknown 103.6
1831 Male, age 72, unknown 59.7
1840 Male, age 53, unknown 38.3
2850 Male, age 76, both hemispheres 36.0
Periaquaductal grey, lateral
nTPM: 63.4
2272 Male, age 74, both hemispheres 80.3
2053 Male, age 18, unknown 71.9
2140 Male, age 76, both hemispheres 37.9
Pretectal area
nTPM: 76.7
2316 Male, age 76, right hemisphere 118.6
1815 Male, age 53, unknown 104.7
2273 Male, age 74, both hemispheres 85.5
1817 Female, age 42, unknown 80.2
2407 Male, age 75, both hemispheres 79.1
2825 Male, age 18, unknown 77.9
2007 Male, age 72, unknown 72.1
2224 Female, age 72, unknown 70.3
2667 Female, age 75, unknown 65.3
1944 Female, age 72, unknown 48.7
1816 Male, age 51, unknown 40.9
Red nucleus
nTPM: 158.6
1821 Female, age 72, unknown 203.1
2823 Male, age 76, right hemisphere 201.6
1865 Male, age 51, unknown 198.1
1904 Male, age 53, unknown 193.6
2503 Female, age 72, unknown 172.4
1954 Female, age 42, unknown 167.4
2227 Male, age 72, unknown 166.6
2769 Male, age 72, unknown 166.6
2785 Male, age 18, unknown 153.3
2588 Male, age 74, left hemisphere 105.2
2725 Female, age 75, unknown 100.9
2584 Male, age 75, left hemisphere 74.6
Substantia nigra
nTPM: 91.7
2409 Female, age 72, unknown 144.2
2590 Female, age 75, unknown 119.9
1851 Male, age 51, unknown 106.0
1889 Female, age 72, unknown 99.8
2241 Male, age 72, unknown 94.2
2583 Male, age 75, right hemisphere 92.0
2699 Male, age 18, unknown 86.6
1941 Male, age 53, unknown 66.3
1916 Female, age 42, unknown 66.2
2665 Male, age 74, both hemispheres 42.0
Superior colliculus
nTPM: 101.8
1913 Female, age 42, unknown 156.1
1895 Male, age 76, right hemisphere 146.7
1995 Male, age 72, unknown 143.7
2587 Male, age 74, left hemisphere 129.7
1839 Male, age 51, unknown 108.3
2668 Female, age 75, unknown 103.5
1796 Male, age 53, unknown 76.9
2087 Female, age 72, unknown 62.2
2261 Male, age 18, unknown 51.7
2664 Male, age 75, both hemispheres 39.2
Ventral tegmental area
nTPM: 104.2
2410 Female, age 72, unknown 154.9
2223 Female, age 72, unknown 127.4
2021 Male, age 53, unknown 92.3
1915 Female, age 42, unknown 87.4
1942 Male, age 51, unknown 83.8
2218 Male, age 76, both hemispheres 79.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.9
Samples: 139

Max nTPM: 309.2
Min nTPM: 17.8
Std nTPM: 51.7
Median nTPM: 66.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 309.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 298.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 284.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 247.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 200.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 195.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 175.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 170.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 169.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 165.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 160.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 806.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 806.9
FF:10158-103A5 76 years, female 806.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.8
Pig sample Sample description nTPM
Midbrain
nTPM: 86.8
Samples: 4

Max nTPM: 216.1
Min nTPM: 29.9
Sample A Female 216.1
Sample B Female 69.1
Sample C Male 32.2
Sample D Male 29.9
Periaqueductal gray
nTPM: 41.1
Samples: 3

Max nTPM: 57.2
Min nTPM: 28.4
Sample B Female 57.2
Sample C Male 28.4
Sample D Male 37.6
Substantia nigra
nTPM: 65.6
Samples: 4

Max nTPM: 98.6
Min nTPM: 41.0
Sample A Female 71.1
Sample B Female 41.0
Sample C Male 51.8
Sample D Male 98.6
Superior colliculi
nTPM: 54.2
Samples: 4

Max nTPM: 72.1
Min nTPM: 30.7
Sample A Female 72.1
Sample B Female 30.7
Sample C Male 57.6
Sample D Male 56.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.2
Sample A Male 12.9
Sample B Male 8.2
Sample C Female 8.2
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
583855 Antisense, RP_040831_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.