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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:238.1 nTPM
HPA:238.1 nTPM
GTEx:772.3 nTPM
FANTOM5:452.9 Scaled Tags Per Million
Pig:385.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 238.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 217.5
1981 Female, age 72, midline 250.5
2816 Male, age 47, midline 226.1
2048 Male, age 55, midline 216.1
2194 Female, age 79, both hemispheres 212.7
2565 Male, age 75, midline 182.2
Cervical spinal cord, dorsal horn
nTPM: 237.7
2296 Male, age 66, both hemispheres 355.3
2173 Female, age 72, unknown 306.1
2069 Male, age 47, both hemispheres 222.5
1877 Male, age 55, unknown 220.1
2721 Male, age 90, both hemispheres 165.2
2297 Male, age 75, both hemispheres 156.8
Cervical spinal cord, ventral horn
nTPM: 238.1
2068 Male, age 55, unknown 264.3
2098 Female, age 72, unknown 260.6
2820 Female, age 79, both hemispheres 230.0
2480 Male, age 75, both hemispheres 228.3
2809 Male, age 90, both hemispheres 226.1
2295 Male, age 66, both hemispheres 219.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 772.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 772.3
Samples: 159

Max nTPM: 1473.5
Min nTPM: 195.1
Std nTPM: 253.2
Median nTPM: 778.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1473.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1446.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1385.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1378.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1363.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1269.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1244.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1172.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1165.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1151.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1146.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1117.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1109.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1107.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1095.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1089.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1071.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1059.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1028.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1019.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1018.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1015.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1014.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1011.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1000.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 998.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 989.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 988.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 985.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 981.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 979.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 978.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 977.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 973.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 970.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 967.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 961.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 960.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 956.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 955.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 948.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 943.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 940.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 937.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 926.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 924.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 921.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 917.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 914.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 904.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 904.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 900.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 876.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 876.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 872.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 872.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 867.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 860.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 859.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 857.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 853.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 847.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 843.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 836.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 829.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 821.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 820.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 817.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 809.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 807.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 804.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 804.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 795.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 793.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 793.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 790.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 785.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 781.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 780.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 778.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 775.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 771.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 766.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 761.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 760.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 759.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 758.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 756.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 750.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 740.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 726.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 725.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 722.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 722.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 721.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 719.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 710.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 710.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 709.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 700.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 698.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 696.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 684.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 677.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 668.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 663.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 662.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 660.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 647.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 644.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 637.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 628.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 627.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 623.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 617.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 610.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 604.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 603.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 597.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 583.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 582.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 580.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 568.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 566.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 565.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 562.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 554.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 552.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 549.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 533.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 532.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 520.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 508.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 501.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 483.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 477.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 467.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 459.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 458.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 453.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 451.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 448.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 437.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 436.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 424.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 419.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 412.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 406.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 403.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 378.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 377.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 376.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 339.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 309.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 298.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 284.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 268.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 244.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 195.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 452.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 452.9
FF:10181-103D1 60 years, female 513.3
FF:10159-103A6 76 years, female 392.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 385.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 294.8
Samples: 4

Max nTPM: 318.4
Min nTPM: 272.4
Sample A Female 275.7
Sample B Female 318.4
Sample C Male 272.4
Sample D Male 312.6
Ventral spinal cord
nTPM: 385.4
Samples: 4

Max nTPM: 487.4
Min nTPM: 315.1
Sample A Female 344.2
Sample B Female 395.0
Sample C Male 315.1
Sample D Male 487.4

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