MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:285.6 nTPM
HPA:285.6 nTPM
GTEx:423.2 nTPM
FANTOM5:139.9 Scaled Tags Per Million
Pig:147.0 nTPM
Mouse:124.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 285.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 271.1
2019 Male, age 18, unknown 296.6
2411 Female, age 72, unknown 282.7
1827 Male, age 72, unknown 278.0
1870 Female, age 42, unknown 275.5
2828 Female, age 72, unknown 266.9
2586 Male, age 75, left hemisphere 264.2
1833 Male, age 53, unknown 264.1
1830 Male, age 51, unknown 263.1
2666 Male, age 74, left hemisphere 260.8
2219 Male, age 76, both hemispheres 259.3
Dorsal raphe nucleus
nTPM: 280.4
2298 Female, age 72, unknown 294.9
1828 Male, age 53, unknown 281.9
2047 Male, age 72, unknown 280.8
2750 Male, age 76, both hemispheres 275.7
2016 Female, age 72, unknown 268.8
Inferior colliculus
nTPM: 273.9
2097 Female, age 72, unknown 292.7
1890 Male, age 53, unknown 280.6
1848 Female, age 42, unknown 267.7
2849 Male, age 72, unknown 254.4
Median raphe nucleus
nTPM: 271.4
2220 Male, age 76, midline 271.4
Pedunculopontine tegmental nucleus
nTPM: 280.4
2334 Male, age 80, both hemispheres 282.1
1921 Female, age 85, both hemispheres 279.9
2338 Male, age 61, both hemispheres 279.2
Periaquaductal grey, anterior
nTPM: 274.7
1947 Male, age 18, unknown 281.2
2502 Female, age 75, unknown 274.3
1795 Male, age 51, unknown 268.7
Periaquaductal grey, dorsal
nTPM: 262.9
1831 Male, age 72, unknown 268.3
1840 Male, age 53, unknown 264.7
2464 Female, age 72, unknown 261.4
2850 Male, age 76, both hemispheres 257.4
Periaquaductal grey, lateral
nTPM: 265.6
2053 Male, age 18, unknown 269.9
2272 Male, age 74, both hemispheres 269.5
2140 Male, age 76, both hemispheres 257.3
Pretectal area
nTPM: 281.3
2007 Male, age 72, unknown 307.3
1817 Female, age 42, unknown 298.9
1816 Male, age 51, unknown 294.9
1944 Female, age 72, unknown 291.4
1815 Male, age 53, unknown 282.4
2273 Male, age 74, both hemispheres 276.5
2224 Female, age 72, unknown 273.7
2667 Female, age 75, unknown 273.6
2407 Male, age 75, both hemispheres 269.3
2825 Male, age 18, unknown 263.9
2316 Male, age 76, right hemisphere 262.5
Red nucleus
nTPM: 285.6
1821 Female, age 72, unknown 317.0
2725 Female, age 75, unknown 296.8
2503 Female, age 72, unknown 288.8
2588 Male, age 74, left hemisphere 284.6
1865 Male, age 51, unknown 283.5
2785 Male, age 18, unknown 283.5
1904 Male, age 53, unknown 283.2
2823 Male, age 76, right hemisphere 282.7
2769 Male, age 72, unknown 281.4
1954 Female, age 42, unknown 279.3
2227 Male, age 72, unknown 276.6
2584 Male, age 75, left hemisphere 270.3
Substantia nigra
nTPM: 282.8
1916 Female, age 42, unknown 302.3
1889 Female, age 72, unknown 300.5
1851 Male, age 51, unknown 300.3
2241 Male, age 72, unknown 283.7
1941 Male, age 53, unknown 282.8
2665 Male, age 74, both hemispheres 276.0
2583 Male, age 75, right hemisphere 273.3
2590 Female, age 75, unknown 272.5
2409 Female, age 72, unknown 270.1
2699 Male, age 18, unknown 266.6
Superior colliculus
nTPM: 271.1
2587 Male, age 74, left hemisphere 278.3
1895 Male, age 76, right hemisphere 277.7
2087 Female, age 72, unknown 277.5
2668 Female, age 75, unknown 275.9
1796 Male, age 53, unknown 273.6
1913 Female, age 42, unknown 269.2
2261 Male, age 18, unknown 268.6
1995 Male, age 72, unknown 265.9
1839 Male, age 51, unknown 265.3
2664 Male, age 75, both hemispheres 258.5
Ventral tegmental area
nTPM: 278.4
2410 Female, age 72, unknown 288.2
1915 Female, age 42, unknown 284.0
2223 Female, age 72, unknown 282.6
2218 Male, age 76, both hemispheres 276.2
1942 Male, age 51, unknown 272.7
2021 Male, age 53, unknown 266.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 423.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 423.2
Samples: 139

Max nTPM: 1076.5
Min nTPM: 207.2
Std nTPM: 132.0
Median nTPM: 403.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1076.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 968.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 769.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 742.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 734.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 697.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 694.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 655.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 654.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 633.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 619.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.9
FF:10158-103A5 76 years, female 139.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.0
Pig sample Sample description nTPM
Midbrain
nTPM: 124.9
Samples: 4

Max nTPM: 139.8
Min nTPM: 109.8
Sample A Female 139.8
Sample B Female 109.8
Sample C Male 138.6
Sample D Male 111.4
Periaqueductal gray
nTPM: 87.7
Samples: 3

Max nTPM: 92.8
Min nTPM: 78.2
Sample B Female 92.2
Sample C Male 92.8
Sample D Male 78.2
Substantia nigra
nTPM: 105.8
Samples: 4

Max nTPM: 166.4
Min nTPM: 73.8
Sample A Female 166.4
Sample B Female 88.4
Sample C Male 94.6
Sample D Male 73.8
Superior colliculi
nTPM: 147.0
Samples: 4

Max nTPM: 180.4
Min nTPM: 113.6
Sample A Female 180.4
Sample B Female 121.2
Sample C Male 172.7
Sample D Male 113.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 124.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.6
Samples: 4

Max nTPM: 167.8
Min nTPM: 94.3
Sample A Male 167.8
Sample B Male 105.0
Sample C Female 94.3
Sample D Female 131.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.