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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:308.7 nTPM
FANTOM5:115.1 Scaled Tags Per Million
Pig:110.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA046693
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 308.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 308.7
Samples: 246

Max nTPM: 940.1
Min nTPM: 160.8
Std nTPM: 99.2
Median nTPM: 286.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 940.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 786.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 767.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 722.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 716.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 594.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 552.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 533.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 522.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 519.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 495.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 472.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 467.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 452.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 449.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 434.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 431.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 427.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 426.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 424.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 421.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 419.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 409.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 408.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 405.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 395.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 395.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 395.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 392.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 391.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 390.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 388.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 383.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 379.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 379.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 375.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 374.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 373.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 372.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 371.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 368.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 366.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 366.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 365.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 359.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 358.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 357.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 356.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 350.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 350.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 347.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 347.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 346.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 346.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 344.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 344.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 344.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 343.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 343.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 338.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 337.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 337.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 335.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 332.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 332.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 331.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 331.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 330.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 329.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 329.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 329.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 328.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 327.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 327.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 326.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 325.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 325.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 323.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 319.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 319.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 319.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 318.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 318.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 316.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 315.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 314.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 312.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 309.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 309.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 307.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 306.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 306.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 306.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 305.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 304.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 304.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 302.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 301.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 301.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 301.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 301.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 300.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 300.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 298.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 297.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 297.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 296.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 293.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 292.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 291.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 291.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 290.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 289.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 289.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 289.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 288.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 288.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 288.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 287.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 287.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 286.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 286.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 286.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 286.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 286.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 285.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 285.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 285.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 284.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 284.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 284.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 283.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 283.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 282.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 281.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 281.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 281.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 280.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 280.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 279.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 279.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 279.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 278.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 278.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 275.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 274.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 273.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 273.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 273.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 272.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 270.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 270.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 269.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 269.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 269.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 269.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 268.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 266.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 266.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 266.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 265.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 265.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 265.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 265.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 264.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 264.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 264.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 264.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 264.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 263.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 262.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 261.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 261.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 261.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 260.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 259.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 258.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 258.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 257.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 257.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 257.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 256.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 255.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 254.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 253.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 251.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 251.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 250.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 250.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 250.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 250.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 250.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 250.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 250.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 249.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 249.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 248.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 248.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 247.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 246.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 246.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 244.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 244.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 243.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 241.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 239.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 238.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 238.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 236.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 236.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 234.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 234.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 233.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 232.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 229.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 229.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 228.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 226.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 225.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 225.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 225.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 225.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 222.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 222.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 221.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 220.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 219.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 219.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 218.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 218.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 214.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 213.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 209.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 201.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 200.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 197.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 195.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 191.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 185.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 181.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 173.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 172.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 171.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 171.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 166.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 160.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 115.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 115.1
FF:10164-103B2 76 years, female 115.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 110.8
Pig sample Sample description nTPM
Caudate
nTPM: 110.9
Samples: 4

Max nTPM: 130.2
Min nTPM: 99.0
Sample A Female 102.5
Sample B Female 111.7
Sample C Male 130.2
Sample D Male 99.0

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