BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:74.5 nTPM
HPA:74.5 nTPM
GTEx:58.3 nTPM
FANTOM5:200.8 Scaled Tags Per Million
Pig:70.1 nTPM
Mouse:80.4 nTPM
Allen mouse:20.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020044Antibody CAB022065
Glial cells HighHigh
Neuronal cells LowLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 74.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.1
2481 Female, age 94, left hemisphere 69.4
2288 Male, age 75, left hemisphere 68.1
2846 Female, age 79, unknown 61.7
2290 Female, age 72, unknown 60.4
1781 Male, age 74, unknown 55.8
1854 Male, age 80, left hemisphere 53.9
1857 Female, age 85, left hemisphere 53.5
2289 Male, age 61, right hemisphere 49.8
Claustrum
nTPM: 58.1
2392 Female, age 94, both hemispheres 65.5
2196 Female, age 79, unknown 64.5
1956 Male, age 74, unknown 64.2
2491 Male, age 75, both hemispheres 60.9
2292 Female, age 85, both hemispheres 59.8
2198 Male, age 80, both hemispheres 56.4
2284 Female, age 91, both hemispheres 53.4
2568 Male, age 61, both hemispheres 52.2
2645 Female, age 72, unknown 46.0
Globus pallidus, externus
nTPM: 66.5
1996 Male, age 80, right hemisphere 73.2
2772 Female, age 79, unknown 72.1
2395 Male, age 75, both hemispheres 67.2
2646 Male, age 61, right hemisphere 61.1
2567 Female, age 72, unknown 59.1
Globus pallidus, internus
nTPM: 74.5
2778 Female, age 91, both hemispheres 91.9
2287 Male, age 75, right hemisphere 87.7
2111 Female, age 85, right hemisphere 75.9
2483 Female, age 94, right hemisphere 70.4
2037 Male, age 80, right hemisphere 66.8
1818 Male, age 74, unknown 64.8
2566 Female, age 72, unknown 64.0
Nucleus accumbens
nTPM: 62.9
2391 Female, age 94, left hemisphere 77.2
2286 Male, age 75, left hemisphere 69.1
2698 Female, age 72, unknown 67.7
1856 Female, age 91, right hemisphere 59.6
1806 Female, age 85, left hemisphere 58.5
1783 Male, age 74, unknown 58.3
2732 Male, age 80, right hemisphere 57.2
2824 Male, age 61, right hemisphere 55.8
Nucleus basalis of Meynert
nTPM: 58.2
2821 Male, age 75, both hemispheres 60.5
2569 Male, age 61, both hemispheres 59.2
2484 Female, age 94, left hemisphere 57.4
2393 Male, age 80, right hemisphere 55.8
Nucleus of the diagonal band
nTPM: 59.6
1812 Female, age 91, both hemispheres 63.2
1979 Male, age 74, unknown 62.3
2775 Male, age 80, right hemisphere 59.6
2195 Female, age 85, both hemispheres 57.9
2029 Male, age 61, right hemisphere 55.1
Olfactory tubercle
nTPM: 54.5
1846 Male, age 80, right hemisphere 60.9
2856 Male, age 75, right hemisphere 54.5
2487 Female, age 94, left hemisphere 52.1
1998 Female, age 91, both hemispheres 50.6
Putamen
nTPM: 56.8
2482 Female, age 94, left hemisphere 66.4
1829 Male, age 74, unknown 59.2
1937 Female, age 91, right hemisphere 58.6
2647 Male, age 75, left hemisphere 56.0
2466 Female, age 79, unknown 55.5
1838 Male, age 80, right hemisphere 52.2
2489 Female, age 72, unknown 49.8
Septal nuclei
nTPM: 57.6
2031 Female, age 72, unknown 62.7
2629 Female, age 94, right hemisphere 60.6
2199 Male, age 80, right hemisphere 59.5
1960 Male, age 74, unknown 58.0
2394 Male, age 61, left hemisphere 56.0
2009 Female, age 91, both hemispheres 54.4
2059 Female, age 85, both hemispheres 51.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 58.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.5
Samples: 246

Max nTPM: 99.9
Min nTPM: 33.2
Std nTPM: 10.0
Median nTPM: 54.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 99.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 85.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 85.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 83.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 82.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 82.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 82.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 81.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 80.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 79.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 79.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.3
Samples: 246

Max nTPM: 123.3
Min nTPM: 33.7
Std nTPM: 11.2
Median nTPM: 57.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 123.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 102.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 95.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 87.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 86.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 86.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 85.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 83.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 82.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 79.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 77.8
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Brain - Putamen (basal ganglia)
Average nTPM: 57.5
Samples: 205

Max nTPM: 126.5
Min nTPM: 36.8
Std nTPM: 12.3
Median nTPM: 55.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 126.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 100.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 100.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 97.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 93.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 90.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 90.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 88.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 86.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 79.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 78.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 200.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 199.0
FF:10164-103B2 76 years, female 199.0
Globus pallidus
Scaled Tags Per Million: 198.4
FF:10161-103A8 76 years, female 265.9
FF:10175-103C4 60 years, female 131.0
Nucleus accumbens
Scaled Tags Per Million: 148.2
FF:10037-101F1 23-56 years, mixed 148.2
Putamen
Scaled Tags Per Million: 200.8
FF:10176-103C5 60 years, female 200.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 70.1
Pig sample Sample description nTPM
Caudate
nTPM: 52.0
Samples: 4

Max nTPM: 59.2
Min nTPM: 42.9
Sample A Female 59.2
Sample B Female 50.2
Sample C Male 55.5
Sample D Male 42.9
Putamen
nTPM: 66.8
Samples: 4

Max nTPM: 80.0
Min nTPM: 50.9
Sample A Female 76.9
Sample B Female 50.9
Sample C Male 80.0
Sample D Male 59.2
Septum
nTPM: 70.1
Samples: 4

Max nTPM: 85.6
Min nTPM: 59.8
Sample A Female 72.3
Sample B Female 59.8
Sample C Male 85.6
Sample D Male 62.7
Ventral pallidum
nTPM: 64.9
Samples: 4

Max nTPM: 77.2
Min nTPM: 55.9
Sample A Female 55.9
Sample B Female 65.8
Sample C Male 77.2
Sample D Male 60.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 80.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 73.7
Samples: 4

Max nTPM: 76.8
Min nTPM: 67.9
Sample A Male 73.8
Sample B Male 67.9
Sample C Female 76.1
Sample D Female 76.8
Septum
nTPM: 80.4
Samples: 4

Max nTPM: 82.9
Min nTPM: 74.3
Sample A Male 74.3
Sample B Male 82.8
Sample C Female 81.7
Sample D Female 82.9
Ventral forebrain
nTPM: 68.9
Samples: 4

Max nTPM: 69.8
Min nTPM: 68.1
Sample A Male 68.6
Sample B Male 68.9
Sample C Female 68.1
Sample D Female 69.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 20.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 20.6
69817898 Antisense, RP_050510_03_H12, Mouse strain C57BL/6J (56 days, male) 20.6
Pallidum
Expression energy: 16.3
69817898 Antisense, RP_050510_03_H12, Mouse strain C57BL/6J (56 days, male) 16.3

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