MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:188.4 nTPM
HPA:188.4 nTPM
GTEx:391.1 nTPM
FANTOM5:247.0 Scaled Tags Per Million
Mouse:1042.1 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 188.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 174.3
2019 Male, age 18, unknown 187.6
2411 Female, age 72, unknown 182.4
1827 Male, age 72, unknown 178.8
1870 Female, age 42, unknown 176.4
2828 Female, age 72, unknown 174.9
2666 Male, age 74, left hemisphere 172.1
1830 Male, age 51, unknown 171.3
2219 Male, age 76, both hemispheres 169.2
1833 Male, age 53, unknown 169.0
2586 Male, age 75, left hemisphere 161.4
Dorsal raphe nucleus
nTPM: 178.0
2298 Female, age 72, unknown 188.6
2750 Male, age 76, both hemispheres 181.8
2047 Male, age 72, unknown 175.7
1828 Male, age 53, unknown 173.7
2016 Female, age 72, unknown 170.3
Inferior colliculus
nTPM: 178.4
2097 Female, age 72, unknown 187.4
1890 Male, age 53, unknown 182.3
1848 Female, age 42, unknown 175.1
2849 Male, age 72, unknown 168.6
Median raphe nucleus
nTPM: 185.2
2220 Male, age 76, midline 185.2
Pedunculopontine tegmental nucleus
nTPM: 180.9
2338 Male, age 61, both hemispheres 184.5
2334 Male, age 80, both hemispheres 180.4
1921 Female, age 85, both hemispheres 177.9
Periaquaductal grey, anterior
nTPM: 174.6
2502 Female, age 75, unknown 181.0
1947 Male, age 18, unknown 173.5
1795 Male, age 51, unknown 169.2
Periaquaductal grey, dorsal
nTPM: 173.1
1840 Male, age 53, unknown 175.2
2464 Female, age 72, unknown 174.1
2850 Male, age 76, both hemispheres 172.2
1831 Male, age 72, unknown 170.7
Periaquaductal grey, lateral
nTPM: 173.3
2272 Male, age 74, both hemispheres 178.6
2053 Male, age 18, unknown 174.2
2140 Male, age 76, both hemispheres 167.2
Pretectal area
nTPM: 180.9
2007 Male, age 72, unknown 191.1
1816 Male, age 51, unknown 189.4
2273 Male, age 74, both hemispheres 184.7
1817 Female, age 42, unknown 184.4
1944 Female, age 72, unknown 183.4
1815 Male, age 53, unknown 182.7
2667 Female, age 75, unknown 181.4
2316 Male, age 76, right hemisphere 177.5
2825 Male, age 18, unknown 173.7
2224 Female, age 72, unknown 173.6
2407 Male, age 75, both hemispheres 168.3
Red nucleus
nTPM: 180.0
1821 Female, age 72, unknown 193.0
2503 Female, age 72, unknown 186.4
1865 Male, age 51, unknown 184.2
1954 Female, age 42, unknown 182.5
1904 Male, age 53, unknown 182.4
2725 Female, age 75, unknown 180.0
2823 Male, age 76, right hemisphere 179.7
2785 Male, age 18, unknown 179.2
2227 Male, age 72, unknown 177.2
2769 Male, age 72, unknown 175.6
2588 Male, age 74, left hemisphere 170.4
2584 Male, age 75, left hemisphere 169.3
Substantia nigra
nTPM: 188.4
2241 Male, age 72, unknown 205.8
2409 Female, age 72, unknown 202.8
1916 Female, age 42, unknown 195.2
1941 Male, age 53, unknown 192.6
1851 Male, age 51, unknown 191.7
1889 Female, age 72, unknown 190.9
2665 Male, age 74, both hemispheres 181.0
2699 Male, age 18, unknown 176.9
2590 Female, age 75, unknown 176.8
2583 Male, age 75, right hemisphere 170.7
Superior colliculus
nTPM: 174.5
2087 Female, age 72, unknown 187.3
1895 Male, age 76, right hemisphere 178.3
2587 Male, age 74, left hemisphere 176.9
2261 Male, age 18, unknown 176.3
1796 Male, age 53, unknown 175.4
2668 Female, age 75, unknown 174.9
1913 Female, age 42, unknown 170.8
1995 Male, age 72, unknown 169.3
1839 Male, age 51, unknown 169.1
2664 Male, age 75, both hemispheres 166.9
Ventral tegmental area
nTPM: 183.5
2410 Female, age 72, unknown 191.9
1915 Female, age 42, unknown 189.0
1942 Male, age 51, unknown 182.3
2218 Male, age 76, both hemispheres 181.6
2223 Female, age 72, unknown 181.0
2021 Male, age 53, unknown 175.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 391.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 391.1
Samples: 139

Max nTPM: 1195.9
Min nTPM: 82.9
Std nTPM: 152.3
Median nTPM: 356.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1195.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 782.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 761.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 748.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 731.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 709.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 704.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 682.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 653.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 638.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 605.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 247.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 247.0
FF:10158-103A5 76 years, female 247.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1042.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1042.1
Samples: 4

Max nTPM: 1114.7
Min nTPM: 974.5
Sample A Male 1114.7
Sample B Male 996.7
Sample C Female 974.5
Sample D Female 1082.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
74641307 Antisense, RP_060220_05_H03, Mouse strain C57BL/6J (56 days, male) 6.9
71280952 Antisense, RP_050818_01_H08, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.