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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:182.4 nTPM
HPA:182.4 nTPM
GTEx:245.2 nTPM
FANTOM5:425.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 182.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 182.2
1981 Female, age 72, midline 187.9
2194 Female, age 79, both hemispheres 185.9
2048 Male, age 55, midline 185.7
2816 Male, age 47, midline 176.0
2565 Male, age 75, midline 175.6
Cervical spinal cord, dorsal horn
nTPM: 181.7
2173 Female, age 72, unknown 197.4
2069 Male, age 47, both hemispheres 184.6
2296 Male, age 66, both hemispheres 181.0
2297 Male, age 75, both hemispheres 181.0
1877 Male, age 55, unknown 176.4
2721 Male, age 90, both hemispheres 169.6
Cervical spinal cord, ventral horn
nTPM: 182.4
2098 Female, age 72, unknown 186.8
2480 Male, age 75, both hemispheres 185.5
2068 Male, age 55, unknown 184.3
2809 Male, age 90, both hemispheres 180.1
2295 Male, age 66, both hemispheres 179.9
2820 Female, age 79, both hemispheres 178.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 245.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 245.2
Samples: 159

Max nTPM: 637.4
Min nTPM: 79.4
Std nTPM: 89.5
Median nTPM: 232.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 637.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 541.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 493.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 442.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 425.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 425.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 421.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 420.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 417.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 416.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 409.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 407.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 379.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 377.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 369.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 367.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 367.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 366.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 365.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 361.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 344.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 344.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 339.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 336.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 332.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 329.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 327.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 322.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 317.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 314.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 307.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 295.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 295.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 294.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 291.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 289.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 288.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 288.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 282.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 280.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 277.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 276.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 275.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 275.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 275.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 274.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 273.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 269.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 268.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 267.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 266.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 265.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 263.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 263.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 263.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 262.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 262.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 259.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 259.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 258.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 258.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 256.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 255.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 254.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 254.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 251.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 251.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 248.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 244.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 244.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 243.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 242.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 241.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 241.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 239.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 238.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 237.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 236.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 234.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 232.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 232.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 232.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 230.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 228.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 227.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 224.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 223.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 223.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 222.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 222.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 221.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 221.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 220.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 219.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 219.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 218.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 217.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 213.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 210.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 208.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 205.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 204.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 203.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 200.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 200.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 199.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 198.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 197.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 196.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 195.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 195.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 195.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 192.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 192.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 191.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 189.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 188.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 186.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 185.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 185.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 184.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 181.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 178.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 177.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 175.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 173.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 170.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 169.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 168.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 167.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 167.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 166.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 165.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 161.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 159.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 158.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 157.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 156.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 154.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 151.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 150.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 148.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 147.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 143.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 140.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 134.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 132.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 130.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 129.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 129.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 127.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 122.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 120.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 102.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 90.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 87.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 79.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 425.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 425.3
FF:10181-103D1 60 years, female 572.1
FF:10159-103A6 76 years, female 278.5

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