We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
BAALC
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • BAALC
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:229.2 nTPM
HPA:229.2 nTPM
GTEx:137.3 nTPM
FANTOM5:691.7 Scaled Tags Per Million
Pig:155.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 229.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 218.9
2048 Male, age 55, midline 237.7
2565 Male, age 75, midline 237.7
1981 Female, age 72, midline 216.0
2194 Female, age 79, both hemispheres 209.8
2816 Male, age 47, midline 193.5
Cervical spinal cord, dorsal horn
nTPM: 216.9
2721 Male, age 90, both hemispheres 251.4
2173 Female, age 72, unknown 225.2
2069 Male, age 47, both hemispheres 209.4
1877 Male, age 55, unknown 209.0
2297 Male, age 75, both hemispheres 208.8
2296 Male, age 66, both hemispheres 197.5
Cervical spinal cord, ventral horn
nTPM: 229.2
2809 Male, age 90, both hemispheres 288.5
2480 Male, age 75, both hemispheres 262.7
2295 Male, age 66, both hemispheres 227.7
2098 Female, age 72, unknown 212.9
2068 Male, age 55, unknown 193.6
2820 Female, age 79, both hemispheres 190.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 137.3
Samples: 159

Max nTPM: 338.8
Min nTPM: 45.5
Std nTPM: 53.0
Median nTPM: 128.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 338.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 288.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 277.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 262.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 251.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 249.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 245.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 245.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 239.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 238.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 236.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 235.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 230.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 224.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 222.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 218.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 217.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 215.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 204.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 203.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 199.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 197.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 189.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 186.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 186.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 184.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 183.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 180.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 178.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 176.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 175.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 171.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 169.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 168.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 168.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 167.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 166.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 165.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 164.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 163.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 161.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 160.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 160.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 158.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 158.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 157.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 156.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 155.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 155.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 153.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 152.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 151.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 151.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 151.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 150.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 150.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 150.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 149.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 149.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 145.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 144.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 143.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 143.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 142.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 141.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 139.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 137.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 137.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 136.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 136.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 136.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 135.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 133.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 133.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 132.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 132.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 130.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 129.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 129.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 128.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 128.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 127.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 127.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 127.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 123.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 123.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 123.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 122.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 121.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 121.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 120.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 119.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 118.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 117.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 117.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 116.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 116.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 115.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 114.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 113.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 112.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 111.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 111.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 110.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 110.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 109.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 109.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 109.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 107.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 107.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 107.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 105.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 105.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 104.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 103.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 103.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 103.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 103.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 103.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 102.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 101.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 100.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 98.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 98.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 97.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 96.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 95.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 93.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 91.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 91.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 90.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 89.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 87.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 86.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 85.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 83.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 81.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 81.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 80.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 79.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 79.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 77.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 74.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 72.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 71.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 71.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 68.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 65.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 64.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 63.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 60.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 57.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 57.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 53.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 49.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 48.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 45.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 691.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 691.7
FF:10159-103A6 76 years, female 739.4
FF:10181-103D1 60 years, female 644.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 155.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 109.9
Samples: 4

Max nTPM: 125.2
Min nTPM: 76.9
Sample A Female 114.5
Sample B Female 123.0
Sample C Male 76.9
Sample D Male 125.2
Ventral spinal cord
nTPM: 155.7
Samples: 4

Max nTPM: 177.2
Min nTPM: 134.4
Sample A Female 151.3
Sample B Female 177.2
Sample C Male 134.4
Sample D Male 159.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.