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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:300.9 nTPM
HPA:300.9 nTPM
FANTOM5:316.4 Scaled Tags Per Million
Pig:155.9 nTPM
Mouse:160.9 nTPM
Allen mouse:1.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 300.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 206.4
2497 Male, age 66, unknown 240.9
2032 Female, age 42, unknown 195.6
2396 Male, age 61, right hemisphere 182.6
Centromedial thalamic nucleus
nTPM: 196.4
2401 Male, age 76, right hemisphere 201.0
2279 Female, age 85, left hemisphere 191.9
Habenula
nTPM: 215.0
2276 Male, age 66, unknown 226.0
1957 Male, age 80, both hemispheres 221.3
2252 Male, age 62, unknown 208.4
2203 Male, age 61, left hemisphere 204.4
Lateral geniculate body
nTPM: 223.5
2857 Male, age 74, right hemisphere 293.8
2659 Male, age 66, unknown 247.2
2575 Female, age 94, right hemisphere 219.5
2399 Male, age 61, left hemisphere 217.7
1953 Male, age 62, unknown 209.5
2035 Female, age 72, unknown 207.7
2106 Female, age 67, right hemisphere 198.7
2841 Male, age 80, both hemispheres 193.7
Lateral thalamic nuclei
nTPM: 245.4
2577 Male, age 74, both hemispheres 274.1
2573 Female, age 94, left hemisphere 270.5
2661 Female, age 72, unknown 254.7
1903 Male, age 76, left hemisphere 224.0
2765 Female, age 67, both hemispheres 203.6
Medial dorsal thalamic nucleus
nTPM: 238.6
2572 Female, age 94, right hemisphere 348.7
2576 Male, age 74, both hemispheres 269.1
2492 Male, age 75, right hemisphere 256.9
1810 Male, age 48, unknown 251.5
2498 Male, age 66, unknown 236.4
2283 Male, age 80, right hemisphere 223.4
2402 Female, age 67, both hemispheres 222.6
2026 Male, age 62, unknown 222.4
2660 Female, age 72, unknown 219.8
1930 Female, age 42, unknown 216.7
1859 Male, age 76, both hemispheres 212.9
1971 Male, age 61, right hemisphere 210.7
2039 Female, age 72, unknown 210.7
Medial geniculate body
nTPM: 258.5
2571 Male, age 75, right hemisphere 340.9
2650 Female, age 94, left hemisphere 282.2
2217 Female, age 72, unknown 256.8
2657 Male, age 74, right hemisphere 246.9
2207 Male, age 80, right hemisphere 237.3
1811 Female, age 42, unknown 223.9
2049 Male, age 76, both hemispheres 221.2
Nucleus reuniens
nTPM: 205.3
2205 Male, age 80, left hemisphere 232.0
2212 Female, age 67, left hemisphere 207.8
2210 Female, age 85, left hemisphere 176.1
Nucleus rhomboideus
nTPM: 206.7
2206 Male, age 80, both hemispheres 238.0
2213 Female, age 67, left hemisphere 195.8
2280 Female, age 85, left hemisphere 186.4
Posterior thalamic nucleus
nTPM: 300.9
2649 Female, age 94, both hemispheres 426.7
2655 Male, age 74, right hemisphere 315.0
2495 Female, age 67, right hemisphere 235.4
2266 Male, age 76, right hemisphere 226.4
Pulvinar
nTPM: 230.4
2724 Male, age 74, right hemisphere 268.2
2499 Male, age 66, unknown 247.9
2582 Female, age 72, unknown 234.6
1932 Male, age 80, right hemisphere 234.4
1899 Female, age 42, unknown 226.9
2496 Female, age 67, right hemisphere 226.0
1929 Male, age 48, unknown 221.1
2214 Male, age 76, right hemisphere 215.8
2398 Male, age 61, left hemisphere 215.7
1972 Male, age 62, unknown 213.3
Subthalamic nucleus
nTPM: 197.8
2282 Male, age 61, both hemispheres 217.4
2216 Male, age 48, unknown 211.4
2056 Female, age 72, unknown 206.1
2779 Female, age 42, unknown 202.0
2124 Male, age 62, unknown 192.1
2406 Female, age 72, unknown 187.9
2275 Male, age 66, unknown 184.8
2658 Male, age 74, both hemispheres 180.8
Ventral posterolateral thalamic nucleus
nTPM: 225.9
2570 Male, age 75, right hemisphere 244.6
2578 Male, age 74, both hemispheres 244.2
2197 Male, age 80, both hemispheres 237.7
2581 Female, age 72, unknown 234.2
2740 Male, age 76, right hemisphere 198.3
2397 Male, age 61, right hemisphere 196.4
Ventral posteromedial thalamic nucleus
nTPM: 241.9
2653 Male, age 74, both hemispheres 265.6
2758 Male, age 80, both hemispheres 247.3
2127 Male, age 76, right hemisphere 243.9
2281 Male, age 75, right hemisphere 235.2
2202 Male, age 61, left hemisphere 217.6
Ventral thalamic nuclei
nTPM: 226.5
2204 Male, age 80, both hemispheres 244.7
2858 Female, age 72, unknown 244.3
2652 Male, age 74, left hemisphere 240.0
2580 Male, age 66, unknown 237.5
1912 Female, age 42, unknown 227.2
2291 Female, age 72, unknown 217.7
2285 Male, age 62, unknown 215.2
1860 Male, age 76, both hemispheres 207.3
1845 Male, age 48, unknown 204.4
Ventromedial nucleus
nTPM: 198.8
1982 Female, age 72, unknown 202.2
1822 Female, age 42, unknown 195.4
Zona incerta
nTPM: 187.9
2208 Male, age 80, right hemisphere 234.9
2663 Female, age 72, unknown 197.3
2403 Male, age 62, unknown 193.1
2215 Male, age 66, unknown 159.3
2822 Male, age 74, right hemisphere 154.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 316.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 316.4
FF:10154-103A1 76 years, female 316.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 155.9
Pig sample Sample description nTPM
Thalamus
nTPM: 155.9
Samples: 4

Max nTPM: 189.4
Min nTPM: 115.1
Sample A Female 189.4
Sample B Female 115.1
Sample C Male 181.7
Sample D Male 137.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 160.9
Samples: 4

Max nTPM: 172.2
Min nTPM: 145.5
Sample A Male 145.5
Sample B Male 172.2
Sample C Female 160.7
Sample D Female 165.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.4
69528040 Antisense, RP_050421_03_A03, Mouse strain C57BL/6J (56 days, male) 2.6
73520964 Antisense, RP_051017_04_E04, Mouse strain C57BL/6J (56 days, male) 0.2

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