MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.8 nTPM
HPA:84.8 nTPM
GTEx:77.6 nTPM
FANTOM5:183.5 Scaled Tags Per Million
Pig:25.2 nTPM
Mouse:90.2 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.5
2586 Male, age 75, left hemisphere 111.7
2666 Male, age 74, left hemisphere 110.2
2828 Female, age 72, unknown 77.6
2219 Male, age 76, both hemispheres 77.3
1833 Male, age 53, unknown 73.4
1827 Male, age 72, unknown 72.6
2019 Male, age 18, unknown 71.6
1870 Female, age 42, unknown 71.5
1830 Male, age 51, unknown 70.3
2411 Female, age 72, unknown 69.0
Dorsal raphe nucleus
nTPM: 75.4
2047 Male, age 72, unknown 88.2
2750 Male, age 76, both hemispheres 81.3
1828 Male, age 53, unknown 77.1
2016 Female, age 72, unknown 67.5
2298 Female, age 72, unknown 62.9
Inferior colliculus
nTPM: 67.7
2849 Male, age 72, unknown 70.1
1890 Male, age 53, unknown 69.2
1848 Female, age 42, unknown 68.8
2097 Female, age 72, unknown 62.7
Median raphe nucleus
nTPM: 79.6
2220 Male, age 76, midline 79.6
Pedunculopontine tegmental nucleus
nTPM: 72.5
2334 Male, age 80, both hemispheres 76.7
1921 Female, age 85, both hemispheres 74.8
2338 Male, age 61, both hemispheres 66.0
Periaquaductal grey, anterior
nTPM: 73.2
1947 Male, age 18, unknown 80.0
1795 Male, age 51, unknown 71.4
2502 Female, age 75, unknown 68.2
Periaquaductal grey, dorsal
nTPM: 57.3
2464 Female, age 72, unknown 58.6
1840 Male, age 53, unknown 57.3
2850 Male, age 76, both hemispheres 57.3
1831 Male, age 72, unknown 55.9
Periaquaductal grey, lateral
nTPM: 62.5
2272 Male, age 74, both hemispheres 64.9
2140 Male, age 76, both hemispheres 61.4
2053 Male, age 18, unknown 61.1
Pretectal area
nTPM: 70.2
2007 Male, age 72, unknown 86.5
1944 Female, age 72, unknown 84.0
1817 Female, age 42, unknown 77.4
1816 Male, age 51, unknown 73.6
1815 Male, age 53, unknown 70.4
2407 Male, age 75, both hemispheres 69.4
2825 Male, age 18, unknown 68.4
2224 Female, age 72, unknown 65.8
2316 Male, age 76, right hemisphere 64.6
2667 Female, age 75, unknown 58.9
2273 Male, age 74, both hemispheres 53.0
Red nucleus
nTPM: 77.8
2588 Male, age 74, left hemisphere 101.2
2725 Female, age 75, unknown 87.2
2584 Male, age 75, left hemisphere 85.5
2785 Male, age 18, unknown 82.0
2227 Male, age 72, unknown 78.8
2769 Male, age 72, unknown 78.8
1954 Female, age 42, unknown 75.1
1904 Male, age 53, unknown 74.5
2503 Female, age 72, unknown 73.8
1865 Male, age 51, unknown 71.4
1821 Female, age 72, unknown 68.7
2823 Male, age 76, right hemisphere 56.7
Substantia nigra
nTPM: 84.8
1916 Female, age 42, unknown 114.8
1941 Male, age 53, unknown 94.4
1851 Male, age 51, unknown 89.8
2665 Male, age 74, both hemispheres 87.2
2583 Male, age 75, right hemisphere 85.9
1889 Female, age 72, unknown 82.6
2699 Male, age 18, unknown 81.5
2590 Female, age 75, unknown 74.1
2241 Male, age 72, unknown 71.5
2409 Female, age 72, unknown 66.2
Superior colliculus
nTPM: 70.4
2668 Female, age 75, unknown 88.6
2664 Male, age 75, both hemispheres 75.1
2587 Male, age 74, left hemisphere 74.4
1796 Male, age 53, unknown 73.1
1839 Male, age 51, unknown 73.0
2261 Male, age 18, unknown 70.3
1895 Male, age 76, right hemisphere 66.2
1913 Female, age 42, unknown 65.3
2087 Female, age 72, unknown 60.3
1995 Male, age 72, unknown 57.6
Ventral tegmental area
nTPM: 79.4
1915 Female, age 42, unknown 90.0
2218 Male, age 76, both hemispheres 84.5
1942 Male, age 51, unknown 82.4
2410 Female, age 72, unknown 77.8
2223 Female, age 72, unknown 72.0
2021 Male, age 53, unknown 69.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.6
Samples: 139

Max nTPM: 142.1
Min nTPM: 37.5
Std nTPM: 19.2
Median nTPM: 79.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 142.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 135.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 122.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 115.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 115.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 115.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 114.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 110.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 109.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 105.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 102.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.5
FF:10158-103A5 76 years, female 183.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.2
Pig sample Sample description nTPM
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 29.9
Min nTPM: 19.5
Sample A Female 22.2
Sample B Female 19.5
Sample C Male 29.9
Sample D Male 26.0
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 22.9
Min nTPM: 18.7
Sample B Female 18.7
Sample C Male 22.9
Sample D Male 19.0
Substantia nigra
nTPM: 25.2
Samples: 4

Max nTPM: 30.6
Min nTPM: 20.0
Sample A Female 28.2
Sample B Female 20.0
Sample C Male 30.6
Sample D Male 21.9
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 13.8
Sample A Female 23.5
Sample B Female 13.8
Sample C Male 26.6
Sample D Male 26.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.2
Samples: 4

Max nTPM: 91.2
Min nTPM: 88.5
Sample A Male 88.5
Sample B Male 90.5
Sample C Female 91.2
Sample D Female 90.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
71211746 Antisense, RP_050816_02_D01, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.