MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.6 nTPM
HPA:83.6 nTPM
GTEx:80.7 nTPM
FANTOM5:262.4 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:55.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.4
1870 Female, age 42, unknown 86.0
2019 Male, age 18, unknown 82.3
1830 Male, age 51, unknown 81.2
1833 Male, age 53, unknown 80.6
2411 Female, age 72, unknown 79.5
2219 Male, age 76, both hemispheres 71.9
2666 Male, age 74, left hemisphere 69.6
2828 Female, age 72, unknown 64.2
1827 Male, age 72, unknown 63.5
2586 Male, age 75, left hemisphere 54.9
Dorsal raphe nucleus
nTPM: 70.3
2750 Male, age 76, both hemispheres 84.6
1828 Male, age 53, unknown 70.0
2016 Female, age 72, unknown 68.6
2298 Female, age 72, unknown 64.3
2047 Male, age 72, unknown 63.9
Inferior colliculus
nTPM: 66.6
2097 Female, age 72, unknown 68.0
1848 Female, age 42, unknown 67.5
1890 Male, age 53, unknown 66.4
2849 Male, age 72, unknown 64.6
Median raphe nucleus
nTPM: 65.6
2220 Male, age 76, midline 65.6
Pedunculopontine tegmental nucleus
nTPM: 77.6
2334 Male, age 80, both hemispheres 81.2
1921 Female, age 85, both hemispheres 76.8
2338 Male, age 61, both hemispheres 74.8
Periaquaductal grey, anterior
nTPM: 64.9
1947 Male, age 18, unknown 73.3
2502 Female, age 75, unknown 64.8
1795 Male, age 51, unknown 56.6
Periaquaductal grey, dorsal
nTPM: 58.8
2464 Female, age 72, unknown 63.3
2850 Male, age 76, both hemispheres 62.0
1831 Male, age 72, unknown 56.3
1840 Male, age 53, unknown 53.6
Periaquaductal grey, lateral
nTPM: 59.0
2272 Male, age 74, both hemispheres 60.3
2053 Male, age 18, unknown 60.1
2140 Male, age 76, both hemispheres 56.6
Pretectal area
nTPM: 65.9
1817 Female, age 42, unknown 76.2
1815 Male, age 53, unknown 75.8
2007 Male, age 72, unknown 72.8
2316 Male, age 76, right hemisphere 69.8
2667 Female, age 75, unknown 63.6
2224 Female, age 72, unknown 63.4
1944 Female, age 72, unknown 61.7
2825 Male, age 18, unknown 61.1
2273 Male, age 74, both hemispheres 60.8
1816 Male, age 51, unknown 60.1
2407 Male, age 75, both hemispheres 59.8
Red nucleus
nTPM: 83.6
1821 Female, age 72, unknown 104.1
2823 Male, age 76, right hemisphere 92.6
1865 Male, age 51, unknown 92.2
1904 Male, age 53, unknown 92.2
1954 Female, age 42, unknown 89.0
2503 Female, age 72, unknown 85.4
2769 Male, age 72, unknown 81.0
2725 Female, age 75, unknown 80.3
2227 Male, age 72, unknown 79.9
2785 Male, age 18, unknown 79.6
2588 Male, age 74, left hemisphere 70.0
2584 Male, age 75, left hemisphere 56.4
Substantia nigra
nTPM: 72.6
2241 Male, age 72, unknown 84.3
2409 Female, age 72, unknown 78.4
1889 Female, age 72, unknown 77.5
1851 Male, age 51, unknown 74.7
2699 Male, age 18, unknown 72.8
1941 Male, age 53, unknown 70.7
1916 Female, age 42, unknown 70.5
2590 Female, age 75, unknown 69.6
2665 Male, age 74, both hemispheres 65.7
2583 Male, age 75, right hemisphere 61.5
Superior colliculus
nTPM: 68.5
1895 Male, age 76, right hemisphere 85.6
1913 Female, age 42, unknown 79.5
1995 Male, age 72, unknown 72.8
2668 Female, age 75, unknown 72.0
2587 Male, age 74, left hemisphere 70.9
1839 Male, age 51, unknown 70.2
2087 Female, age 72, unknown 59.9
1796 Male, age 53, unknown 59.8
2664 Male, age 75, both hemispheres 57.4
2261 Male, age 18, unknown 56.8
Ventral tegmental area
nTPM: 68.5
2410 Female, age 72, unknown 75.4
2223 Female, age 72, unknown 70.1
1915 Female, age 42, unknown 69.1
2218 Male, age 76, both hemispheres 68.4
1942 Male, age 51, unknown 65.3
2021 Male, age 53, unknown 62.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.7
Samples: 139

Max nTPM: 163.3
Min nTPM: 38.9
Std nTPM: 26.3
Median nTPM: 76.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 163.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 150.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 148.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 147.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 146.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 141.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 131.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 127.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 124.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 122.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 122.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 262.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 262.4
FF:10158-103A5 76 years, female 262.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Midbrain
nTPM: 60.7
Samples: 4

Max nTPM: 72.7
Min nTPM: 52.1
Sample A Female 65.3
Sample B Female 72.7
Sample C Male 52.1
Sample D Male 52.5
Periaqueductal gray
nTPM: 51.8
Samples: 3

Max nTPM: 59.2
Min nTPM: 45.7
Sample B Female 59.2
Sample C Male 50.4
Sample D Male 45.7
Substantia nigra
nTPM: 62.7
Samples: 4

Max nTPM: 76.9
Min nTPM: 52.6
Sample A Female 76.9
Sample B Female 52.6
Sample C Male 64.0
Sample D Male 57.1
Superior colliculi
nTPM: 60.9
Samples: 4

Max nTPM: 72.5
Min nTPM: 38.4
Sample A Female 70.1
Sample B Female 38.4
Sample C Male 72.5
Sample D Male 62.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 57.2
Min nTPM: 54.4
Sample A Male 55.6
Sample B Male 57.2
Sample C Female 54.8
Sample D Female 54.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74357607 Antisense, RP_060119_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.