MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.9 nTPM
HPA:71.9 nTPM
GTEx:99.8 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:21.9 nTPM
Mouse:11.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.2
1870 Female, age 42, unknown 77.3
2411 Female, age 72, unknown 74.0
2828 Female, age 72, unknown 72.0
1833 Male, age 53, unknown 71.3
2586 Male, age 75, left hemisphere 70.2
1830 Male, age 51, unknown 69.9
1827 Male, age 72, unknown 66.9
2666 Male, age 74, left hemisphere 63.9
2019 Male, age 18, unknown 63.4
2219 Male, age 76, both hemispheres 62.9
Dorsal raphe nucleus
nTPM: 71.6
2750 Male, age 76, both hemispheres 75.7
2016 Female, age 72, unknown 72.8
2298 Female, age 72, unknown 70.5
1828 Male, age 53, unknown 69.4
2047 Male, age 72, unknown 69.4
Inferior colliculus
nTPM: 65.4
2097 Female, age 72, unknown 66.6
1848 Female, age 42, unknown 66.2
2849 Male, age 72, unknown 65.3
1890 Male, age 53, unknown 63.6
Median raphe nucleus
nTPM: 70.3
2220 Male, age 76, midline 70.3
Pedunculopontine tegmental nucleus
nTPM: 66.8
2334 Male, age 80, both hemispheres 69.4
1921 Female, age 85, both hemispheres 68.5
2338 Male, age 61, both hemispheres 62.6
Periaquaductal grey, anterior
nTPM: 69.2
1947 Male, age 18, unknown 70.3
2502 Female, age 75, unknown 70.3
1795 Male, age 51, unknown 67.1
Periaquaductal grey, dorsal
nTPM: 67.3
2850 Male, age 76, both hemispheres 69.0
1831 Male, age 72, unknown 67.1
2464 Female, age 72, unknown 66.7
1840 Male, age 53, unknown 66.4
Periaquaductal grey, lateral
nTPM: 68.3
2053 Male, age 18, unknown 71.3
2140 Male, age 76, both hemispheres 69.2
2272 Male, age 74, both hemispheres 64.3
Pretectal area
nTPM: 66.7
2224 Female, age 72, unknown 72.1
2667 Female, age 75, unknown 71.8
2825 Male, age 18, unknown 71.7
2273 Male, age 74, both hemispheres 69.5
2316 Male, age 76, right hemisphere 68.2
1815 Male, age 53, unknown 66.9
2407 Male, age 75, both hemispheres 66.0
1817 Female, age 42, unknown 64.8
2007 Male, age 72, unknown 61.6
1944 Female, age 72, unknown 60.7
1816 Male, age 51, unknown 59.7
Red nucleus
nTPM: 71.9
1904 Male, age 53, unknown 77.7
1821 Female, age 72, unknown 76.9
2769 Male, age 72, unknown 76.3
2227 Male, age 72, unknown 75.4
2503 Female, age 72, unknown 75.1
1954 Female, age 42, unknown 74.8
1865 Male, age 51, unknown 74.2
2823 Male, age 76, right hemisphere 71.6
2785 Male, age 18, unknown 66.5
2725 Female, age 75, unknown 65.8
2588 Male, age 74, left hemisphere 65.7
2584 Male, age 75, left hemisphere 63.1
Substantia nigra
nTPM: 67.8
2699 Male, age 18, unknown 76.7
1851 Male, age 51, unknown 74.6
2590 Female, age 75, unknown 70.7
1916 Female, age 42, unknown 67.4
2583 Male, age 75, right hemisphere 67.0
1889 Female, age 72, unknown 66.1
1941 Male, age 53, unknown 65.4
2241 Male, age 72, unknown 64.4
2409 Female, age 72, unknown 63.2
2665 Male, age 74, both hemispheres 62.0
Superior colliculus
nTPM: 68.0
1913 Female, age 42, unknown 75.0
1995 Male, age 72, unknown 74.0
2664 Male, age 75, both hemispheres 73.3
2587 Male, age 74, left hemisphere 70.1
1839 Male, age 51, unknown 68.2
1796 Male, age 53, unknown 67.4
1895 Male, age 76, right hemisphere 64.9
2668 Female, age 75, unknown 63.9
2087 Female, age 72, unknown 62.0
2261 Male, age 18, unknown 61.8
Ventral tegmental area
nTPM: 71.8
2410 Female, age 72, unknown 75.4
2223 Female, age 72, unknown 73.7
1915 Female, age 42, unknown 72.6
1942 Male, age 51, unknown 71.6
2021 Male, age 53, unknown 70.6
2218 Male, age 76, both hemispheres 66.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.8
Samples: 139

Max nTPM: 208.6
Min nTPM: 44.7
Std nTPM: 25.9
Median nTPM: 96.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 208.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 183.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 150.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 149.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 145.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 144.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 142.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 142.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 141.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 141.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 140.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.1
FF:10158-103A5 76 years, female 69.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.9
Pig sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 40.8
Min nTPM: 14.0
Sample A Female 40.8
Sample B Female 18.1
Sample C Male 14.0
Sample D Male 14.6
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 16.4
Min nTPM: 14.3
Sample B Female 14.3
Sample C Male 16.4
Sample D Male 14.4
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.2
Sample A Female 21.0
Sample B Female 19.3
Sample C Male 17.2
Sample D Male 18.9
Superior colliculi
nTPM: 21.7
Samples: 4

Max nTPM: 29.7
Min nTPM: 15.7
Sample A Female 25.4
Sample B Female 29.7
Sample C Male 15.7
Sample D Male 15.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.4
Sample A Male 13.5
Sample B Male 10.4
Sample C Female 12.6
Sample D Female 11.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
77620762 Antisense, RP_070129_03_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.