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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:182.0 nTPM
HPA:182.0 nTPM
FANTOM5:451.7 Scaled Tags Per Million
Pig:147.2 nTPM
Mouse:76.2 nTPM
Allen mouse:1.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 182.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 138.4
2497 Male, age 66, unknown 166.5
2032 Female, age 42, unknown 146.8
2396 Male, age 61, right hemisphere 101.7
Centromedial thalamic nucleus
nTPM: 182.0
2279 Female, age 85, left hemisphere 212.5
2401 Male, age 76, right hemisphere 151.4
Habenula
nTPM: 157.2
2276 Male, age 66, unknown 174.4
2252 Male, age 62, unknown 158.6
2203 Male, age 61, left hemisphere 155.2
1957 Male, age 80, both hemispheres 140.5
Lateral geniculate body
nTPM: 162.1
2857 Male, age 74, right hemisphere 202.7
2575 Female, age 94, right hemisphere 176.8
2841 Male, age 80, both hemispheres 172.5
2399 Male, age 61, left hemisphere 169.3
2659 Male, age 66, unknown 167.8
2035 Female, age 72, unknown 154.9
1953 Male, age 62, unknown 130.7
2106 Female, age 67, right hemisphere 122.4
Lateral thalamic nuclei
nTPM: 166.3
2573 Female, age 94, left hemisphere 201.3
2661 Female, age 72, unknown 170.8
2765 Female, age 67, both hemispheres 159.2
2577 Male, age 74, both hemispheres 158.4
1903 Male, age 76, left hemisphere 141.8
Medial dorsal thalamic nucleus
nTPM: 168.5
2572 Female, age 94, right hemisphere 224.2
2492 Male, age 75, right hemisphere 209.1
2576 Male, age 74, both hemispheres 185.0
2402 Female, age 67, both hemispheres 174.1
2660 Female, age 72, unknown 173.7
2498 Male, age 66, unknown 166.3
2026 Male, age 62, unknown 162.7
2039 Female, age 72, unknown 161.0
1859 Male, age 76, both hemispheres 159.8
1810 Male, age 48, unknown 153.8
2283 Male, age 80, right hemisphere 150.7
1930 Female, age 42, unknown 138.5
1971 Male, age 61, right hemisphere 132.1
Medial geniculate body
nTPM: 166.5
2571 Male, age 75, right hemisphere 194.1
2650 Female, age 94, left hemisphere 193.7
2657 Male, age 74, right hemisphere 174.4
2217 Female, age 72, unknown 172.1
2207 Male, age 80, right hemisphere 163.6
2049 Male, age 76, both hemispheres 146.9
1811 Female, age 42, unknown 121.1
Nucleus reuniens
nTPM: 164.0
2210 Female, age 85, left hemisphere 195.6
2205 Male, age 80, left hemisphere 171.3
2212 Female, age 67, left hemisphere 125.2
Nucleus rhomboideus
nTPM: 174.0
2280 Female, age 85, left hemisphere 201.9
2206 Male, age 80, both hemispheres 162.7
2213 Female, age 67, left hemisphere 157.3
Posterior thalamic nucleus
nTPM: 178.4
2655 Male, age 74, right hemisphere 198.8
2649 Female, age 94, both hemispheres 197.6
2495 Female, age 67, right hemisphere 189.1
2266 Male, age 76, right hemisphere 127.8
Pulvinar
nTPM: 160.3
2724 Male, age 74, right hemisphere 184.9
2582 Female, age 72, unknown 180.1
2398 Male, age 61, left hemisphere 174.0
1932 Male, age 80, right hemisphere 165.9
2499 Male, age 66, unknown 164.1
2214 Male, age 76, right hemisphere 152.8
1899 Female, age 42, unknown 149.4
2496 Female, age 67, right hemisphere 147.2
1929 Male, age 48, unknown 144.9
1972 Male, age 62, unknown 140.1
Subthalamic nucleus
nTPM: 166.2
2282 Male, age 61, both hemispheres 204.1
2216 Male, age 48, unknown 201.0
2056 Female, age 72, unknown 191.7
2124 Male, age 62, unknown 170.9
2779 Female, age 42, unknown 164.9
2658 Male, age 74, both hemispheres 137.5
2275 Male, age 66, unknown 135.1
2406 Female, age 72, unknown 124.1
Ventral posterolateral thalamic nucleus
nTPM: 168.6
2570 Male, age 75, right hemisphere 211.5
2581 Female, age 72, unknown 174.5
2197 Male, age 80, both hemispheres 168.2
2740 Male, age 76, right hemisphere 166.0
2578 Male, age 74, both hemispheres 147.9
2397 Male, age 61, right hemisphere 143.1
Ventral posteromedial thalamic nucleus
nTPM: 171.1
2281 Male, age 75, right hemisphere 220.2
2127 Male, age 76, right hemisphere 176.3
2758 Male, age 80, both hemispheres 164.7
2653 Male, age 74, both hemispheres 147.8
2202 Male, age 61, left hemisphere 146.7
Ventral thalamic nuclei
nTPM: 165.9
2291 Female, age 72, unknown 182.5
2204 Male, age 80, both hemispheres 177.9
2858 Female, age 72, unknown 174.7
2580 Male, age 66, unknown 170.4
2652 Male, age 74, left hemisphere 168.3
1845 Male, age 48, unknown 160.1
1860 Male, age 76, both hemispheres 159.3
2285 Male, age 62, unknown 158.7
1912 Female, age 42, unknown 140.7
Ventromedial nucleus
nTPM: 107.5
1982 Female, age 72, unknown 109.9
1822 Female, age 42, unknown 105.1
Zona incerta
nTPM: 152.7
2663 Female, age 72, unknown 185.0
2208 Male, age 80, right hemisphere 165.7
2403 Male, age 62, unknown 149.8
2215 Male, age 66, unknown 140.7
2822 Male, age 74, right hemisphere 122.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 451.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 451.7
FF:10154-103A1 76 years, female 451.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.2
Pig sample Sample description nTPM
Thalamus
nTPM: 147.3
Samples: 4

Max nTPM: 207.0
Min nTPM: 122.3
Sample A Female 122.3
Sample B Female 125.8
Sample C Male 133.9
Sample D Male 207.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 76.2
Samples: 4

Max nTPM: 80.8
Min nTPM: 70.7
Sample A Male 70.7
Sample B Male 75.2
Sample C Female 80.8
Sample D Female 78.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.9
35 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 1.9
36 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 0.1

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