We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HEPACAM
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • HEPACAM
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:183.6 nTPM
HPA:183.6 nTPM
FANTOM5:255.3 Scaled Tags Per Million
Pig:126.5 nTPM
Allen mouse:2.9 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 183.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 147.1
2301 Female, age 85, both hemispheres 157.0
2188 Female, age 91, both hemispheres 146.6
2090 Male, age 80, both hemispheres 142.6
1984 Male, age 76, both hemispheres 142.3
Dorsal cochlear nucleus
nTPM: 149.1
2378 Male, age 80, both hemispheres 159.1
2802 Male, age 74, right hemisphere 152.3
2370 Male, age 61, both hemispheres 150.0
2058 Male, age 76, both hemispheres 144.0
2187 Female, age 91, both hemispheres 139.9
Dorsal tegmental nucleus
nTPM: 136.0
2083 Male, age 80, both hemispheres 158.7
1936 Male, age 76, left hemisphere 143.0
2326 Male, age 74, both hemispheres 139.0
2358 Male, age 61, both hemispheres 103.3
Dorsolateral tegmental area
nTPM: 134.9
2654 Male, age 80, both hemispheres 154.8
2751 Female, age 85, both hemispheres 153.6
2141 Male, age 76, both hemispheres 126.1
2360 Male, age 74, both hemispheres 121.6
2337 Male, age 61, both hemispheres 118.5
Kolliker-Fuse nucleus
nTPM: 149.6
2315 Male, age 76, right hemisphere 161.0
2793 Female, age 91, left hemisphere 153.6
2163 Male, age 80, both hemispheres 134.1
Lateral lemniscal nuclei
nTPM: 140.5
2320 Female, age 91, left hemisphere 152.7
2169 Male, age 76, both hemispheres 145.8
2746 Female, age 85, left hemisphere 138.6
2036 Male, age 80, both hemispheres 136.7
2453 Male, age 74, right hemisphere 128.9
Lateral parabrachial nucleus
nTPM: 144.7
2792 Male, age 76, both hemispheres 184.0
2013 Male, age 80, both hemispheres 150.2
2139 Female, age 85, right hemisphere 139.9
2790 Male, age 61, both hemispheres 104.7
Lateral vestibular nucleus
nTPM: 151.1
2311 Male, age 80, both hemispheres 155.7
2184 Male, age 76, both hemispheres 146.4
Locus coeruleus
nTPM: 118.3
2317 Female, age 72, unknown 131.2
2162 Male, age 80, both hemispheres 126.3
1980 Male, age 76, both hemispheres 116.7
2014 Male, age 55, unknown 116.1
2123 Female, age 91, both hemispheres 115.1
2788 Male, age 74, unknown 111.5
2720 Male, age 74, both hemispheres 110.9
Medial olivary nucleus
nTPM: 183.6
1962 Male, age 76, both hemispheres 191.4
2138 Female, age 91, both hemispheres 188.4
1943 Male, age 61, both hemispheres 188.3
2851 Male, age 80, both hemispheres 166.2
Medial parabrachial nucleus
nTPM: 138.3
2786 Male, age 76, both hemispheres 150.8
2463 Female, age 85, right hemisphere 145.5
2170 Female, age 91, both hemispheres 142.4
2854 Male, age 80, both hemispheres 136.0
2156 Male, age 61, both hemispheres 116.6
Medial periolivary nuclei
nTPM: 137.7
2063 Male, age 76, both hemispheres 144.7
2081 Male, age 80, both hemispheres 144.5
2458 Female, age 91, both hemispheres 144.3
2791 Male, age 74, right hemisphere 132.5
2171 Female, age 85, both hemispheres 122.6
Motor facial nucleus
nTPM: 142.0
2795 Female, age 91, both hemispheres 155.7
2126 Male, age 61, both hemispheres 152.2
2062 Male, age 76, both hemispheres 141.5
2697 Female, age 85, both hemispheres 139.8
2365 Male, age 74, right hemisphere 135.1
2327 Male, age 80, both hemispheres 127.5
Motor trigeminal nucleus
nTPM: 137.8
2309 Male, age 76, both hemispheres 152.0
2321 Female, age 91, both hemispheres 143.8
2560 Male, age 74, both hemispheres 132.1
2079 Male, age 80, both hemispheres 131.1
2335 Male, age 61, both hemispheres 129.9
Nuclei of the trapezoid body
nTPM: 139.5
1983 Male, age 76, both hemispheres 151.8
2166 Male, age 80, both hemispheres 150.6
2368 Female, age 91, both hemispheres 147.6
2159 Male, age 61, both hemispheres 132.6
2735 Female, age 85, both hemispheres 115.0
Paramedian reticular nucleus
nTPM: 141.9
2057 Male, age 80, both hemispheres 150.9
2313 Male, age 61, both hemispheres 146.0
2052 Male, age 76, both hemispheres 140.6
2050 Female, age 85, both hemispheres 130.3
Pontine nuclei
nTPM: 142.7
1968 Male, age 76, left hemisphere 164.0
2109 Female, age 72, unknown 150.6
1863 Male, age 55, unknown 149.4
2319 Female, age 91, both hemispheres 149.2
2115 Male, age 80, left hemisphere 148.0
2454 Male, age 74, left hemisphere 139.8
2787 Female, age 85, both hemispheres 125.2
2727 Male, age 61, right hemisphere 115.7
Pontine raphe nucleus
nTPM: 123.6
2853 Male, age 76, midline 133.5
2122 Female, age 85, midline 113.7
Posteroventral cochlear nucleus
nTPM: 152.3
2070 Male, age 76, both hemispheres 173.3
2341 Male, age 80, both hemispheres 158.9
2135 Female, age 91, both hemispheres 156.6
2371 Male, age 61, both hemispheres 147.3
2752 Female, age 85, both hemispheres 125.2
Principal sensory trigeminal nucleus
nTPM: 134.7
2324 Male, age 76, both hemispheres 155.8
2367 Female, age 91, left hemisphere 141.0
2008 Male, age 80, left hemisphere 123.7
2158 Male, age 61, both hemispheres 118.5
Reticular pontine nucleus, caudal
nTPM: 149.3
2092 Male, age 76, both hemispheres 171.8
2457 Female, age 91, both hemispheres 154.3
2559 Male, age 74, both hemispheres 136.5
2332 Male, age 80, right hemisphere 134.7
Reticular pontine nucleus, oral
nTPM: 145.1
2366 Female, age 91, both hemispheres 155.4
2167 Male, age 76, both hemispheres 155.3
1939 Male, age 80, both hemispheres 146.3
2012 Female, age 85, both hemispheres 135.2
2361 Male, age 74, both hemispheres 133.4
Reticulotegmental nucleus
nTPM: 140.0
2333 Male, age 80, both hemispheres 152.2
2322 Female, age 91, both hemispheres 146.8
2452 Male, age 74, both hemispheres 135.9
2325 Male, age 76, both hemispheres 125.0
Spinal trigeminal nucleus, oral
nTPM: 145.8
1978 Male, age 76, both hemispheres 166.2
2164 Male, age 80, both hemispheres 144.0
2737 Female, age 85, both hemispheres 127.1
Subcoeruleus area
nTPM: 137.9
2369 Female, age 85, left hemisphere 161.4
2089 Male, age 76, left hemisphere 142.9
1958 Male, age 80, both hemispheres 133.7
2451 Male, age 74, both hemispheres 128.3
2323 Female, age 91, left hemisphere 123.3
Superior olive
nTPM: 141.8
2020 Male, age 76, both hemispheres 161.2
2329 Male, age 80, right hemisphere 151.0
2561 Female, age 91, both hemispheres 141.1
2364 Male, age 74, right hemisphere 135.1
1875 Female, age 85, both hemispheres 120.9
Superior vestibular nucleus
nTPM: 142.1
2061 Male, age 76, both hemispheres 156.4
2015 Male, age 80, both hemispheres 144.2
2383 Male, age 74, both hemispheres 125.8
Ventral periolivary nuclei
nTPM: 138.0
2023 Male, age 76, both hemispheres 168.7
2165 Male, age 80, both hemispheres 141.7
2130 Female, age 85, both hemispheres 121.5
2794 Female, age 91, left hemisphere 119.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 142.7
2456 Female, age 91, both hemispheres 154.2
1959 Male, age 76, both hemispheres 153.6
2161 Male, age 80, both hemispheres 145.1
2840 Female, age 85, both hemispheres 138.9
2359 Male, age 61, both hemispheres 132.4
2449 Male, age 74, both hemispheres 131.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 255.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 255.3
FF:10182-103D2 60 years, female 280.2
FF:10165-103B3 76 years, female 230.3
Pons
Scaled Tags Per Million: 236.5
FF:10033-101E6 18-54 years, mixed 236.5

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.5
Pig sample Sample description nTPM
Pons
nTPM: 126.6
Samples: 4

Max nTPM: 172.8
Min nTPM: 105.8
Sample A Female 111.8
Sample B Female 105.8
Sample C Male 115.8
Sample D Male 172.8

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 2.9
35 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 2.9
36 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.