MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:182.8 nTPM
HPA:182.8 nTPM
GTEx:35.5 nTPM
FANTOM5:395.9 Scaled Tags Per Million
Pig:165.3 nTPM
Mouse:72.0 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 182.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 165.2
2828 Female, age 72, unknown 194.2
1870 Female, age 42, unknown 184.1
2586 Male, age 75, left hemisphere 174.5
1830 Male, age 51, unknown 170.5
1833 Male, age 53, unknown 170.2
2411 Female, age 72, unknown 161.1
2019 Male, age 18, unknown 158.1
1827 Male, age 72, unknown 154.7
2666 Male, age 74, left hemisphere 143.6
2219 Male, age 76, both hemispheres 141.0
Dorsal raphe nucleus
nTPM: 153.4
2016 Female, age 72, unknown 176.2
2750 Male, age 76, both hemispheres 174.7
1828 Male, age 53, unknown 158.6
2047 Male, age 72, unknown 129.5
2298 Female, age 72, unknown 127.9
Inferior colliculus
nTPM: 149.8
2849 Male, age 72, unknown 157.1
1848 Female, age 42, unknown 154.7
1890 Male, age 53, unknown 145.9
2097 Female, age 72, unknown 141.6
Median raphe nucleus
nTPM: 125.4
2220 Male, age 76, midline 125.4
Pedunculopontine tegmental nucleus
nTPM: 129.5
2334 Male, age 80, both hemispheres 139.0
1921 Female, age 85, both hemispheres 135.8
2338 Male, age 61, both hemispheres 113.5
Periaquaductal grey, anterior
nTPM: 157.0
2502 Female, age 75, unknown 172.6
1795 Male, age 51, unknown 152.5
1947 Male, age 18, unknown 145.9
Periaquaductal grey, dorsal
nTPM: 146.5
2464 Female, age 72, unknown 157.0
1831 Male, age 72, unknown 144.7
2850 Male, age 76, both hemispheres 142.9
1840 Male, age 53, unknown 141.4
Periaquaductal grey, lateral
nTPM: 153.6
2053 Male, age 18, unknown 161.7
2140 Male, age 76, both hemispheres 152.6
2272 Male, age 74, both hemispheres 146.6
Pretectal area
nTPM: 157.9
2667 Female, age 75, unknown 183.7
2316 Male, age 76, right hemisphere 183.0
2273 Male, age 74, both hemispheres 164.5
2224 Female, age 72, unknown 163.5
1815 Male, age 53, unknown 160.5
2825 Male, age 18, unknown 155.9
2407 Male, age 75, both hemispheres 155.7
1817 Female, age 42, unknown 149.4
1944 Female, age 72, unknown 145.6
1816 Male, age 51, unknown 138.8
2007 Male, age 72, unknown 135.8
Red nucleus
nTPM: 182.8
2227 Male, age 72, unknown 208.9
2769 Male, age 72, unknown 207.9
1904 Male, age 53, unknown 200.7
2503 Female, age 72, unknown 198.6
1865 Male, age 51, unknown 194.9
1954 Female, age 42, unknown 187.5
2823 Male, age 76, right hemisphere 184.8
1821 Female, age 72, unknown 179.8
2785 Male, age 18, unknown 178.8
2588 Male, age 74, left hemisphere 162.9
2725 Female, age 75, unknown 155.6
2584 Male, age 75, left hemisphere 132.7
Substantia nigra
nTPM: 146.9
2699 Male, age 18, unknown 170.5
1851 Male, age 51, unknown 164.9
2409 Female, age 72, unknown 154.8
1916 Female, age 42, unknown 149.3
2590 Female, age 75, unknown 148.3
1889 Female, age 72, unknown 148.0
2583 Male, age 75, right hemisphere 146.9
2665 Male, age 74, both hemispheres 132.4
2241 Male, age 72, unknown 128.4
1941 Male, age 53, unknown 125.5
Superior colliculus
nTPM: 168.5
1995 Male, age 72, unknown 215.0
1913 Female, age 42, unknown 193.0
2664 Male, age 75, both hemispheres 188.2
1895 Male, age 76, right hemisphere 163.1
1839 Male, age 51, unknown 162.4
1796 Male, age 53, unknown 162.3
2587 Male, age 74, left hemisphere 153.8
2261 Male, age 18, unknown 151.7
2087 Female, age 72, unknown 148.2
2668 Female, age 75, unknown 146.9
Ventral tegmental area
nTPM: 156.1
2410 Female, age 72, unknown 165.1
2021 Male, age 53, unknown 163.5
2223 Female, age 72, unknown 163.1
1915 Female, age 42, unknown 158.2
1942 Male, age 51, unknown 147.1
2218 Male, age 76, both hemispheres 139.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 139

Max nTPM: 98.9
Min nTPM: 7.0
Std nTPM: 16.5
Median nTPM: 31.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 98.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 94.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 75.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 75.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 71.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 69.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 68.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 68.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 63.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 395.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 395.9
FF:10158-103A5 76 years, female 395.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 165.3
Pig sample Sample description nTPM
Midbrain
nTPM: 165.4
Samples: 4

Max nTPM: 272.0
Min nTPM: 117.4
Sample A Female 272.0
Sample B Female 150.3
Sample C Male 117.4
Sample D Male 121.7
Periaqueductal gray
nTPM: 126.8
Samples: 3

Max nTPM: 144.2
Min nTPM: 117.8
Sample B Female 144.2
Sample C Male 117.8
Sample D Male 118.3
Substantia nigra
nTPM: 155.3
Samples: 4

Max nTPM: 233.0
Min nTPM: 106.8
Sample A Female 152.2
Sample B Female 106.8
Sample C Male 129.1
Sample D Male 233.0
Superior colliculi
nTPM: 128.6
Samples: 4

Max nTPM: 159.8
Min nTPM: 65.7
Sample A Female 151.5
Sample B Female 65.7
Sample C Male 137.3
Sample D Male 159.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.0
Samples: 4

Max nTPM: 74.8
Min nTPM: 66.6
Sample A Male 74.4
Sample B Male 66.6
Sample C Female 72.1
Sample D Female 74.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
35 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 2.5
36 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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