MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.2 nTPM
HPA:83.2 nTPM
GTEx:115.9 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:155.2 nTPM
Mouse:535.3 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.0
2019 Male, age 18, unknown 92.8
2411 Female, age 72, unknown 80.2
2219 Male, age 76, both hemispheres 77.9
1827 Male, age 72, unknown 77.7
2666 Male, age 74, left hemisphere 76.7
1870 Female, age 42, unknown 74.0
1833 Male, age 53, unknown 73.4
2828 Female, age 72, unknown 71.0
1830 Male, age 51, unknown 70.1
2586 Male, age 75, left hemisphere 66.2
Dorsal raphe nucleus
nTPM: 79.1
2298 Female, age 72, unknown 89.9
1828 Male, age 53, unknown 83.4
2750 Male, age 76, both hemispheres 76.3
2047 Male, age 72, unknown 74.8
2016 Female, age 72, unknown 71.3
Inferior colliculus
nTPM: 78.1
2097 Female, age 72, unknown 86.6
1890 Male, age 53, unknown 80.6
1848 Female, age 42, unknown 75.4
2849 Male, age 72, unknown 69.9
Median raphe nucleus
nTPM: 75.4
2220 Male, age 76, midline 75.4
Pedunculopontine tegmental nucleus
nTPM: 81.2
1921 Female, age 85, both hemispheres 82.3
2334 Male, age 80, both hemispheres 82.3
2338 Male, age 61, both hemispheres 79.1
Periaquaductal grey, anterior
nTPM: 77.2
2502 Female, age 75, unknown 82.9
1795 Male, age 51, unknown 74.5
1947 Male, age 18, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 72.2
2850 Male, age 76, both hemispheres 73.3
1840 Male, age 53, unknown 72.5
2464 Female, age 72, unknown 72.4
1831 Male, age 72, unknown 70.5
Periaquaductal grey, lateral
nTPM: 72.3
2272 Male, age 74, both hemispheres 76.9
2053 Male, age 18, unknown 70.7
2140 Male, age 76, both hemispheres 69.3
Pretectal area
nTPM: 83.2
1817 Female, age 42, unknown 96.2
2007 Male, age 72, unknown 96.2
1944 Female, age 72, unknown 95.6
1816 Male, age 51, unknown 92.4
1815 Male, age 53, unknown 84.3
2273 Male, age 74, both hemispheres 81.5
2224 Female, age 72, unknown 81.1
2667 Female, age 75, unknown 77.8
2316 Male, age 76, right hemisphere 73.8
2825 Male, age 18, unknown 68.5
2407 Male, age 75, both hemispheres 67.3
Red nucleus
nTPM: 79.1
1821 Female, age 72, unknown 92.5
2785 Male, age 18, unknown 88.6
2725 Female, age 75, unknown 82.2
2503 Female, age 72, unknown 81.7
1865 Male, age 51, unknown 80.4
2823 Male, age 76, right hemisphere 80.4
1954 Female, age 42, unknown 78.2
1904 Male, age 53, unknown 75.8
2227 Male, age 72, unknown 75.5
2769 Male, age 72, unknown 74.9
2588 Male, age 74, left hemisphere 71.9
2584 Male, age 75, left hemisphere 66.9
Substantia nigra
nTPM: 82.5
2241 Male, age 72, unknown 95.5
1889 Female, age 72, unknown 92.6
1916 Female, age 42, unknown 91.9
1851 Male, age 51, unknown 87.3
1941 Male, age 53, unknown 86.1
2409 Female, age 72, unknown 78.2
2665 Male, age 74, both hemispheres 78.1
2699 Male, age 18, unknown 74.9
2590 Female, age 75, unknown 73.9
2583 Male, age 75, right hemisphere 66.3
Superior colliculus
nTPM: 76.3
2587 Male, age 74, left hemisphere 88.9
2087 Female, age 72, unknown 84.3
2668 Female, age 75, unknown 78.2
2261 Male, age 18, unknown 77.3
1895 Male, age 76, right hemisphere 76.5
1796 Male, age 53, unknown 75.9
1913 Female, age 42, unknown 74.9
1995 Male, age 72, unknown 72.7
1839 Male, age 51, unknown 72.0
2664 Male, age 75, both hemispheres 62.6
Ventral tegmental area
nTPM: 79.5
2410 Female, age 72, unknown 87.8
2218 Male, age 76, both hemispheres 84.3
1915 Female, age 42, unknown 82.7
1942 Male, age 51, unknown 76.6
2223 Female, age 72, unknown 74.5
2021 Male, age 53, unknown 70.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 115.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.9
Samples: 139

Max nTPM: 253.5
Min nTPM: 39.7
Std nTPM: 32.9
Median nTPM: 110.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 253.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 217.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 214.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 194.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 190.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 182.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 168.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 165.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 164.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 162.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 158.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 155.2
Pig sample Sample description nTPM
Midbrain
nTPM: 132.8
Samples: 4

Max nTPM: 164.9
Min nTPM: 111.3
Sample A Female 118.1
Sample B Female 111.3
Sample C Male 164.9
Sample D Male 136.8
Periaqueductal gray
nTPM: 94.2
Samples: 3

Max nTPM: 101.3
Min nTPM: 88.2
Sample B Female 93.1
Sample C Male 101.3
Sample D Male 88.2
Substantia nigra
nTPM: 110.9
Samples: 4

Max nTPM: 159.9
Min nTPM: 80.6
Sample A Female 159.9
Sample B Female 92.8
Sample C Male 110.1
Sample D Male 80.6
Superior colliculi
nTPM: 155.2
Samples: 4

Max nTPM: 197.2
Min nTPM: 113.7
Sample A Female 171.3
Sample B Female 113.7
Sample C Male 197.2
Sample D Male 138.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 535.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 535.4
Samples: 4

Max nTPM: 552.8
Min nTPM: 515.7
Sample A Male 552.8
Sample B Male 540.4
Sample C Female 515.7
Sample D Female 532.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
73513447 Antisense, RP_051121_02_B08, Mouse strain C57BL/6J (56 days, male) 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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