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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:124.3 nTPM
HPA:124.3 nTPM
GTEx:160.3 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Pig:56.2 nTPM
Mouse:288.8 nTPM
Allen mouse:17.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 124.3
Sample id Sample description nTPM
Amygdala
nTPM: 119.1
2814 Male, age 76, right hemisphere 130.0
2514 Male, age 75, right hemisphere 121.3
1987 Female, age 91, left hemisphere 118.6
2695 Female, age 67, right hemisphere 115.3
2517 Female, age 94, left hemisphere 110.4
Basal amygdala
nTPM: 111.4
2609 Male, age 75, right hemisphere 118.6
2243 Female, age 91, right hemisphere 117.0
2110 Male, age 80, left hemisphere 116.8
1955 Male, age 76, both hemispheres 113.8
2685 Female, age 94, left hemisphere 107.8
2827 Female, age 67, right hemisphere 94.1
Central amygdala
nTPM: 116.5
1905 Male, age 76, both hemispheres 126.9
2515 Male, age 75, right hemisphere 119.4
2239 Male, age 80, left hemisphere 115.7
2701 Female, age 91, right hemisphere 111.7
2826 Female, age 94, left hemisphere 108.9
Corticomedial amygdala
nTPM: 114.5
2829 Male, age 80, left hemisphere 124.9
2428 Male, age 75, right hemisphere 121.8
2429 Female, age 94, left hemisphere 118.4
2240 Male, age 76, both hemispheres 113.0
2242 Female, age 91, right hemisphere 113.0
2535 Female, age 67, right hemisphere 95.7
Lateral amygdala
nTPM: 112.3
1883 Male, age 76, both hemispheres 133.6
2516 Male, age 75, right hemisphere 121.9
2534 Female, age 94, left hemisphere 113.0
2255 Female, age 91, right hemisphere 105.4
2256 Male, age 80, left hemisphere 104.2
2830 Female, age 67, right hemisphere 95.9
Stria terminalis, bed nucleus
nTPM: 124.3
1974 Female, age 91, both hemispheres 140.0
2486 Female, age 94, both hemispheres 126.4
2201 Male, age 74, unknown 106.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 160.3
Samples: 152

Max nTPM: 381.3
Min nTPM: 58.7
Std nTPM: 45.6
Median nTPM: 159.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 381.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 268.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 261.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 252.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 250.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 250.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 241.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 238.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 232.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 230.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 225.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 221.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 220.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 215.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 214.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 213.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 211.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 211.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 210.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 207.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 206.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 205.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 204.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 204.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 203.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 199.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 198.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 198.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 197.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 196.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 196.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 193.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 192.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 191.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 191.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 189.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 188.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 188.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 186.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 186.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 186.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 185.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 182.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 181.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 180.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 180.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 179.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 179.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 179.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 178.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 176.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 175.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 174.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 174.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 174.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 171.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 171.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 171.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 170.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 170.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 170.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 168.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 168.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 167.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 166.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 164.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 164.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 163.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 163.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 162.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 162.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 162.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 161.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 161.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 160.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 160.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 158.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 158.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 158.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 157.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 157.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 157.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 155.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 155.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 153.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 153.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 153.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 150.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 150.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 149.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 148.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 148.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 146.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 144.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 143.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 143.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 141.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 140.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 139.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 139.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 138.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 137.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 137.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 136.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 136.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 136.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 135.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 134.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 132.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 131.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 131.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 130.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 130.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 126.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 126.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 124.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 122.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 122.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 121.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 119.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 119.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 115.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 114.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 113.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 112.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 112.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 108.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 107.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 106.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 104.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 104.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 102.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 102.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 101.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 100.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 98.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 97.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 92.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 91.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 90.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 87.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 87.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 81.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 61.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 58.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 117.4
FF:10151-102I7 76 years, female 117.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.2
Pig sample Sample description nTPM
Amygdala
nTPM: 56.2
Samples: 4

Max nTPM: 71.8
Min nTPM: 48.5
Sample A Female 71.8
Sample B Female 54.3
Sample C Male 48.5
Sample D Male 50.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 288.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 288.8
Samples: 4

Max nTPM: 309.8
Min nTPM: 279.0
Sample A Male 279.3
Sample B Male 287.0
Sample C Female 309.8
Sample D Female 279.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.8
1207 Antisense, RP_Baylor_103242, Mouse strain C57BL/6J (56 days, male) 17.8
1208 Antisense, RP_Baylor_103242, Mouse strain C57BL/6J (56 days, male) 15.8

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