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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:125.4 nTPM
HPA:125.4 nTPM
GTEx:92.0 nTPM
FANTOM5:107.3 Scaled Tags Per Million
Pig:84.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 125.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 120.4
1981 Female, age 72, midline 131.6
2194 Female, age 79, both hemispheres 124.1
2048 Male, age 55, midline 121.5
2565 Male, age 75, midline 114.5
2816 Male, age 47, midline 110.3
Cervical spinal cord, dorsal horn
nTPM: 125.4
2173 Female, age 72, unknown 144.0
2297 Male, age 75, both hemispheres 127.7
2069 Male, age 47, both hemispheres 127.2
2721 Male, age 90, both hemispheres 120.0
2296 Male, age 66, both hemispheres 119.4
1877 Male, age 55, unknown 114.2
Cervical spinal cord, ventral horn
nTPM: 121.2
2098 Female, age 72, unknown 127.6
2068 Male, age 55, unknown 123.6
2480 Male, age 75, both hemispheres 121.3
2809 Male, age 90, both hemispheres 119.3
2820 Female, age 79, both hemispheres 117.8
2295 Male, age 66, both hemispheres 117.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 92.0
Samples: 159

Max nTPM: 235.1
Min nTPM: 58.3
Std nTPM: 22.6
Median nTPM: 87.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 235.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 169.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 159.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 146.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 139.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 137.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 134.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 133.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 131.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 130.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 129.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 128.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 127.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 124.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 121.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 120.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 117.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 116.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 115.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 115.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 115.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 115.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 113.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 112.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 112.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 110.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 110.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 108.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 108.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 107.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 107.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 107.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 106.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 103.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 103.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 101.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 101.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 101.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 100.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 99.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 99.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 98.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 98.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 97.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 97.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 97.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 96.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 95.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 95.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 95.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 95.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 93.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 93.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 92.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 92.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 92.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 91.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 91.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 91.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 90.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 90.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 90.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 89.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 89.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 89.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 89.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 89.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 89.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 89.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 88.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 88.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 88.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 88.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 88.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 87.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 87.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 87.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 87.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 86.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 86.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 86.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 86.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 86.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 86.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 85.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 85.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 84.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 84.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 84.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 84.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 84.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 83.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 82.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 82.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 82.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 82.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 81.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 81.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 81.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 81.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 80.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 80.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 80.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 79.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 79.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 79.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 79.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 79.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 78.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 78.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 78.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 78.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 78.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 78.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 78.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 77.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 77.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 77.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 77.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 77.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 77.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 76.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 76.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 75.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 75.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 75.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 75.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 75.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 74.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 74.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 74.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 73.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 73.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 73.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 73.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 72.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 72.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 71.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 71.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 71.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 70.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 69.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 69.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 68.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 67.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 67.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 67.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 66.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 64.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 64.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 63.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 58.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 58.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 107.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 107.3
FF:10181-103D1 60 years, female 128.0
FF:10159-103A6 76 years, female 86.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 70.3
Samples: 4

Max nTPM: 85.3
Min nTPM: 55.7
Sample A Female 85.3
Sample B Female 64.2
Sample C Male 55.7
Sample D Male 75.8
Ventral spinal cord
nTPM: 84.2
Samples: 4

Max nTPM: 92.4
Min nTPM: 70.9
Sample A Female 87.5
Sample B Female 92.4
Sample C Male 86.1
Sample D Male 70.9

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