We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GHITM
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • GHITM
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:169.5 nTPM
FANTOM5:162.3 Scaled Tags Per Million
Pig:66.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA016464Antibody HPA061664
Glial cells Not detectedNot detected
Neuronal cells LowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 169.5
Samples: 246

Max nTPM: 365.6
Min nTPM: 76.3
Std nTPM: 43.5
Median nTPM: 165.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 365.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 334.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 313.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 299.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 294.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 289.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 272.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 267.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 256.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 255.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 254.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 253.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 252.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 248.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 242.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 236.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 235.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 232.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 231.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 231.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 229.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 226.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 225.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 224.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 223.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 222.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 222.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 222.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 221.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 221.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 220.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 218.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 217.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 216.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 214.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 214.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 214.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 211.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 211.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 210.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 205.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 205.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 204.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 204.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 203.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 202.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 202.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 201.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 198.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 198.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 198.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 198.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 197.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 197.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 197.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 194.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 194.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 192.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 192.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 191.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 191.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 189.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 187.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 186.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 186.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 184.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 184.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 184.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 183.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 182.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 182.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 182.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 182.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 181.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 181.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 180.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 180.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 179.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 179.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 179.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 178.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 178.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 178.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 177.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 176.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 176.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 176.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 176.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 176.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 176.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 176.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 175.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 175.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 175.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 175.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 174.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 174.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 174.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 172.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 172.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 172.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 172.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 172.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 172.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 171.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 170.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 170.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 169.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 169.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 168.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 168.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 167.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 167.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 166.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 166.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 165.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 165.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 165.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 165.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 165.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 165.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 165.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 165.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 165.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 164.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 164.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 164.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 163.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 163.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 162.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 161.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 161.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 160.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 160.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 160.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 160.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 159.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 159.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 159.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 158.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 158.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 156.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 156.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 156.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 155.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 155.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 154.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 153.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 153.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 152.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 152.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 152.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 151.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 151.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 150.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 150.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 149.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 149.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 149.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 149.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 148.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 148.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 147.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 147.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 147.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 147.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 147.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 147.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 146.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 145.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 145.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 145.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 144.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 144.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 144.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 144.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 144.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 143.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 143.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 143.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 142.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 142.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 142.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 141.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 141.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 140.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 139.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 139.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 138.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 138.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 138.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 138.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 138.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 137.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 136.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 136.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 135.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 135.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 135.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 133.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 133.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 133.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 133.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 132.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 131.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 131.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 131.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 130.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 130.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 128.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 127.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 127.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 126.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 126.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 126.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 125.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 125.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 123.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 123.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 121.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 121.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 120.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 120.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 119.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 118.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 117.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 116.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 116.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 115.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 115.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 112.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 111.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 111.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 105.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 104.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 99.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 98.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 97.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 96.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 91.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 89.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 88.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 87.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 76.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 162.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 162.3
FF:10164-103B2 76 years, female 162.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.3
Pig sample Sample description nTPM
Caudate
nTPM: 66.3
Samples: 4

Max nTPM: 73.8
Min nTPM: 59.2
Sample A Female 65.2
Sample B Female 59.2
Sample C Male 73.8
Sample D Male 66.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.