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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:55.6 nTPM
GTEx:46.3 nTPM
FANTOM5:89.0 Scaled Tags Per Million
Pig:38.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 55.6
Sample id Sample description nTPM
Putamen
nTPM: 55.6
2482 Female, age 94, left hemisphere 61.7
2466 Female, age 79, unknown 57.6
1838 Male, age 80, right hemisphere 56.8
1937 Female, age 91, right hemisphere 56.6
1829 Male, age 74, unknown 54.8
2647 Male, age 75, left hemisphere 52.0
2489 Female, age 72, unknown 49.4

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 46.3
Samples: 205

Max nTPM: 99.7
Min nTPM: 27.1
Std nTPM: 9.3
Median nTPM: 45.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 99.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 76.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 71.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 70.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 65.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 65.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 64.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 64.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 61.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 61.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 61.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 61.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 61.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 60.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 60.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 59.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 59.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 58.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 58.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 57.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 57.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 57.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 57.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 56.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 56.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 55.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 55.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 55.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 55.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 54.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 54.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 54.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 54.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 53.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 53.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 53.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 53.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 53.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 53.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 52.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 52.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 52.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 52.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 52.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 52.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 52.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 52.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 52.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 52.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 52.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 51.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 51.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 51.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 51.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 51.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 51.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 50.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 50.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 50.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 50.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 50.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 50.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 50.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 49.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 49.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 49.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 49.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 49.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 49.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 49.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 49.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 49.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 48.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 48.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 48.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 48.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 48.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 48.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 48.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 48.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 48.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 47.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 47.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 47.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 47.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 47.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 47.4
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 47.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 47.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 47.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 46.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 46.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 46.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 46.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 46.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 46.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 46.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 46.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 46.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 46.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 46.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 45.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 45.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 45.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 45.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 45.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 45.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 45.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 45.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 45.1
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 45.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 44.9
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 44.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 44.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 44.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 44.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 43.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 43.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 43.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 43.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 43.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 43.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 43.3
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 43.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 43.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 43.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 43.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 42.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 42.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 42.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 42.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 41.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 41.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 41.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 41.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 41.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 41.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 41.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 41.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 41.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 40.9
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 40.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 40.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 40.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 40.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 40.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 40.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 40.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 40.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 40.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 40.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 40.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 40.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 39.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 39.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 39.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 39.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 39.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 39.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 38.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 38.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 38.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 38.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 37.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 37.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 37.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 37.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 37.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 37.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 37.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 36.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 36.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 36.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 36.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 36.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 36.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 36.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 36.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 36.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 36.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 36.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 36.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 35.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 35.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 35.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 35.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 34.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 34.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 34.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 34.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 34.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 34.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 34.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 33.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 33.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 33.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 33.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 33.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 33.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 33.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 32.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 29.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 29.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 29.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 27.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 89.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 89.0
FF:10176-103C5 60 years, female 89.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.5
Pig sample Sample description nTPM
Putamen
nTPM: 38.5
Samples: 4

Max nTPM: 51.3
Min nTPM: 31.0
Sample A Female 36.7
Sample B Female 31.0
Sample C Male 51.3
Sample D Male 35.0

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