MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.6 nTPM
HPA:62.6 nTPM
GTEx:67.1 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:207.3 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.9
2586 Male, age 75, left hemisphere 46.8
2411 Female, age 72, unknown 36.4
1827 Male, age 72, unknown 35.8
1833 Male, age 53, unknown 30.4
2666 Male, age 74, left hemisphere 25.6
1830 Male, age 51, unknown 24.2
2828 Female, age 72, unknown 22.6
1870 Female, age 42, unknown 19.7
2019 Male, age 18, unknown 19.0
2219 Male, age 76, both hemispheres 18.2
Dorsal raphe nucleus
nTPM: 39.9
2298 Female, age 72, unknown 61.3
2047 Male, age 72, unknown 50.5
1828 Male, age 53, unknown 35.4
2016 Female, age 72, unknown 28.9
2750 Male, age 76, both hemispheres 23.4
Inferior colliculus
nTPM: 62.6
2849 Male, age 72, unknown 77.9
1848 Female, age 42, unknown 76.1
2097 Female, age 72, unknown 59.2
1890 Male, age 53, unknown 37.4
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Pedunculopontine tegmental nucleus
nTPM: 51.0
1921 Female, age 85, both hemispheres 78.8
2334 Male, age 80, both hemispheres 53.9
2338 Male, age 61, both hemispheres 20.4
Periaquaductal grey, anterior
nTPM: 31.4
2502 Female, age 75, unknown 53.3
1947 Male, age 18, unknown 20.7
1795 Male, age 51, unknown 20.4
Periaquaductal grey, dorsal
nTPM: 40.6
2464 Female, age 72, unknown 58.7
1840 Male, age 53, unknown 45.4
2850 Male, age 76, both hemispheres 34.5
1831 Male, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 27.0
2053 Male, age 18, unknown 34.6
2140 Male, age 76, both hemispheres 27.1
2272 Male, age 74, both hemispheres 19.4
Pretectal area
nTPM: 22.8
2825 Male, age 18, unknown 38.4
2316 Male, age 76, right hemisphere 32.1
1817 Female, age 42, unknown 26.0
1816 Male, age 51, unknown 25.0
2007 Male, age 72, unknown 23.4
2667 Female, age 75, unknown 21.8
1944 Female, age 72, unknown 21.0
2273 Male, age 74, both hemispheres 17.7
2224 Female, age 72, unknown 16.8
1815 Male, age 53, unknown 15.4
2407 Male, age 75, both hemispheres 13.1
Red nucleus
nTPM: 37.7
2725 Female, age 75, unknown 58.9
2769 Male, age 72, unknown 47.3
2823 Male, age 76, right hemisphere 45.7
1954 Female, age 42, unknown 45.5
2227 Male, age 72, unknown 45.3
2588 Male, age 74, left hemisphere 44.3
1821 Female, age 72, unknown 38.4
2503 Female, age 72, unknown 36.9
1865 Male, age 51, unknown 31.4
1904 Male, age 53, unknown 25.1
2785 Male, age 18, unknown 22.3
2584 Male, age 75, left hemisphere 11.2
Substantia nigra
nTPM: 14.9
1889 Female, age 72, unknown 27.6
1941 Male, age 53, unknown 25.1
1916 Female, age 42, unknown 18.7
2665 Male, age 74, both hemispheres 16.2
2699 Male, age 18, unknown 15.3
1851 Male, age 51, unknown 10.2
2241 Male, age 72, unknown 9.7
2583 Male, age 75, right hemisphere 9.2
2590 Female, age 75, unknown 9.2
2409 Female, age 72, unknown 7.9
Superior colliculus
nTPM: 28.1
1895 Male, age 76, right hemisphere 70.9
2587 Male, age 74, left hemisphere 54.4
1839 Male, age 51, unknown 34.0
1796 Male, age 53, unknown 24.4
2261 Male, age 18, unknown 21.6
2087 Female, age 72, unknown 21.5
2664 Male, age 75, both hemispheres 15.5
1995 Male, age 72, unknown 13.5
2668 Female, age 75, unknown 13.4
1913 Female, age 42, unknown 11.8
Ventral tegmental area
nTPM: 19.5
2410 Female, age 72, unknown 25.2
1942 Male, age 51, unknown 23.5
2218 Male, age 76, both hemispheres 21.7
2021 Male, age 53, unknown 18.1
1915 Female, age 42, unknown 14.5
2223 Female, age 72, unknown 13.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.1
Samples: 139

Max nTPM: 350.5
Min nTPM: 1.2
Std nTPM: 64.9
Median nTPM: 44.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 350.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 300.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 253.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 247.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 225.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 209.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 198.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 186.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 179.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 174.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 172.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 207.3
Pig sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 15.0
Min nTPM: 3.3
Sample A Female 15.0
Sample B Female 10.3
Sample C Male 3.7
Sample D Male 3.3
Periaqueductal gray
nTPM: 8.4
Samples: 3

Max nTPM: 9.8
Min nTPM: 7.3
Sample B Female 7.3
Sample C Male 8.1
Sample D Male 9.8
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 61.4
Min nTPM: 6.7
Sample A Female 10.7
Sample B Female 61.4
Sample C Male 6.7
Sample D Male 7.6
Superior colliculi
nTPM: 207.3
Samples: 4

Max nTPM: 775.1
Min nTPM: 4.6
Sample A Female 39.5
Sample B Female 775.1
Sample C Male 4.6
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Male 0.6
Sample B Male 0.7
Sample C Female 1.3
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
1180 Antisense, RP_Baylor_102702, Mouse strain C57BL/6J (56 days, male) 0.0
1179 Antisense, RP_Baylor_102702, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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