MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1117.4 nTPM
HPA:1117.4 nTPM
GTEx:1307.7 nTPM
FANTOM5:52.1 Scaled Tags Per Million
Pig:260.7 nTPM
Mouse:169.9 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1117.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1098.9
2666 Male, age 74, left hemisphere 1124.7
1870 Female, age 42, unknown 1118.3
2586 Male, age 75, left hemisphere 1101.9
2828 Female, age 72, unknown 1098.4
2219 Male, age 76, both hemispheres 1097.0
1830 Male, age 51, unknown 1095.3
2411 Female, age 72, unknown 1094.9
1833 Male, age 53, unknown 1093.4
1827 Male, age 72, unknown 1085.6
2019 Male, age 18, unknown 1079.6
Dorsal raphe nucleus
nTPM: 1094.0
2016 Female, age 72, unknown 1104.1
2298 Female, age 72, unknown 1095.6
2750 Male, age 76, both hemispheres 1093.2
1828 Male, age 53, unknown 1090.4
2047 Male, age 72, unknown 1086.6
Inferior colliculus
nTPM: 1099.5
2849 Male, age 72, unknown 1107.4
1890 Male, age 53, unknown 1106.5
1848 Female, age 42, unknown 1097.0
2097 Female, age 72, unknown 1087.2
Median raphe nucleus
nTPM: 1088.2
2220 Male, age 76, midline 1088.2
Pedunculopontine tegmental nucleus
nTPM: 1117.4
2338 Male, age 61, both hemispheres 1159.7
2334 Male, age 80, both hemispheres 1108.5
1921 Female, age 85, both hemispheres 1084.0
Periaquaductal grey, anterior
nTPM: 1085.2
2502 Female, age 75, unknown 1101.1
1947 Male, age 18, unknown 1080.2
1795 Male, age 51, unknown 1074.1
Periaquaductal grey, dorsal
nTPM: 1096.8
1840 Male, age 53, unknown 1116.2
2850 Male, age 76, both hemispheres 1097.4
1831 Male, age 72, unknown 1091.9
2464 Female, age 72, unknown 1081.5
Periaquaductal grey, lateral
nTPM: 1088.7
2053 Male, age 18, unknown 1108.7
2140 Male, age 76, both hemispheres 1086.2
2272 Male, age 74, both hemispheres 1071.2
Pretectal area
nTPM: 1086.7
2825 Male, age 18, unknown 1098.1
1815 Male, age 53, unknown 1097.5
2316 Male, age 76, right hemisphere 1096.2
2224 Female, age 72, unknown 1092.1
1817 Female, age 42, unknown 1090.2
2407 Male, age 75, both hemispheres 1087.8
2667 Female, age 75, unknown 1085.3
1944 Female, age 72, unknown 1078.9
1816 Male, age 51, unknown 1078.6
2007 Male, age 72, unknown 1078.4
2273 Male, age 74, both hemispheres 1071.1
Red nucleus
nTPM: 1106.7
1865 Male, age 51, unknown 1130.1
2503 Female, age 72, unknown 1126.2
1821 Female, age 72, unknown 1120.1
1904 Male, age 53, unknown 1115.9
2725 Female, age 75, unknown 1108.3
2769 Male, age 72, unknown 1107.2
2588 Male, age 74, left hemisphere 1102.6
2584 Male, age 75, left hemisphere 1099.8
2227 Male, age 72, unknown 1098.8
1954 Female, age 42, unknown 1096.9
2785 Male, age 18, unknown 1088.5
2823 Male, age 76, right hemisphere 1085.6
Substantia nigra
nTPM: 1116.4
2699 Male, age 18, unknown 1156.0
2409 Female, age 72, unknown 1150.9
1851 Male, age 51, unknown 1140.9
2665 Male, age 74, both hemispheres 1138.9
2241 Male, age 72, unknown 1126.4
1916 Female, age 42, unknown 1111.2
1889 Female, age 72, unknown 1094.9
2590 Female, age 75, unknown 1093.0
2583 Male, age 75, right hemisphere 1080.6
1941 Male, age 53, unknown 1071.5
Superior colliculus
nTPM: 1097.5
2587 Male, age 74, left hemisphere 1127.3
1913 Female, age 42, unknown 1121.0
1995 Male, age 72, unknown 1119.3
2668 Female, age 75, unknown 1097.4
1839 Male, age 51, unknown 1094.7
1796 Male, age 53, unknown 1089.7
2664 Male, age 75, both hemispheres 1089.4
1895 Male, age 76, right hemisphere 1086.8
2261 Male, age 18, unknown 1075.1
2087 Female, age 72, unknown 1074.0
Ventral tegmental area
nTPM: 1107.7
1915 Female, age 42, unknown 1124.2
2021 Male, age 53, unknown 1121.7
2223 Female, age 72, unknown 1117.4
2410 Female, age 72, unknown 1105.3
1942 Male, age 51, unknown 1089.6
2218 Male, age 76, both hemispheres 1088.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1307.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1307.7
Samples: 139

Max nTPM: 4752.8
Min nTPM: 394.4
Std nTPM: 580.5
Median nTPM: 1183.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4752.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3150.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3109.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3026.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2370.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2296.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2232.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2158.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2096.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2090.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2082.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.1
FF:10158-103A5 76 years, female 52.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 260.7
Pig sample Sample description nTPM
Midbrain
nTPM: 251.7
Samples: 4

Max nTPM: 376.6
Min nTPM: 169.3
Sample A Female 376.6
Sample B Female 270.2
Sample C Male 190.5
Sample D Male 169.3
Periaqueductal gray
nTPM: 202.8
Samples: 3

Max nTPM: 218.7
Min nTPM: 177.8
Sample B Female 218.7
Sample C Male 212.0
Sample D Male 177.8
Substantia nigra
nTPM: 260.7
Samples: 4

Max nTPM: 313.3
Min nTPM: 217.0
Sample A Female 313.3
Sample B Female 276.1
Sample C Male 217.0
Sample D Male 236.4
Superior colliculi
nTPM: 260.4
Samples: 4

Max nTPM: 320.1
Min nTPM: 213.3
Sample A Female 320.1
Sample B Female 288.5
Sample C Male 219.5
Sample D Male 213.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.9
Samples: 4

Max nTPM: 187.1
Min nTPM: 158.4
Sample A Male 187.1
Sample B Male 166.3
Sample C Female 158.4
Sample D Female 167.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
69262228 Antisense, RP_050301_01_F08, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.