MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:130.2 nTPM
HPA:130.2 nTPM
GTEx:151.6 nTPM
FANTOM5:234.2 Scaled Tags Per Million
Pig:89.8 nTPM
Mouse:139.9 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 130.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109.1
1870 Female, age 42, unknown 121.3
1833 Male, age 53, unknown 113.8
2411 Female, age 72, unknown 113.7
1830 Male, age 51, unknown 110.8
2219 Male, age 76, both hemispheres 108.1
2828 Female, age 72, unknown 107.5
2586 Male, age 75, left hemisphere 106.5
2019 Male, age 18, unknown 106.2
1827 Male, age 72, unknown 105.6
2666 Male, age 74, left hemisphere 97.3
Dorsal raphe nucleus
nTPM: 114.5
2298 Female, age 72, unknown 118.3
2750 Male, age 76, both hemispheres 115.8
2047 Male, age 72, unknown 114.9
2016 Female, age 72, unknown 111.7
1828 Male, age 53, unknown 111.6
Inferior colliculus
nTPM: 107.4
2097 Female, age 72, unknown 110.6
1890 Male, age 53, unknown 107.3
2849 Male, age 72, unknown 106.4
1848 Female, age 42, unknown 105.5
Median raphe nucleus
nTPM: 130.2
2220 Male, age 76, midline 130.2
Pedunculopontine tegmental nucleus
nTPM: 116.9
2338 Male, age 61, both hemispheres 125.2
2334 Male, age 80, both hemispheres 113.9
1921 Female, age 85, both hemispheres 111.7
Periaquaductal grey, anterior
nTPM: 106.3
1947 Male, age 18, unknown 107.8
1795 Male, age 51, unknown 106.0
2502 Female, age 75, unknown 105.1
Periaquaductal grey, dorsal
nTPM: 110.0
2850 Male, age 76, both hemispheres 121.3
1840 Male, age 53, unknown 108.5
2464 Female, age 72, unknown 105.3
1831 Male, age 72, unknown 104.9
Periaquaductal grey, lateral
nTPM: 111.0
2140 Male, age 76, both hemispheres 111.2
2272 Male, age 74, both hemispheres 111.0
2053 Male, age 18, unknown 110.8
Pretectal area
nTPM: 110.7
2273 Male, age 74, both hemispheres 121.2
2667 Female, age 75, unknown 118.1
2224 Female, age 72, unknown 115.3
1944 Female, age 72, unknown 112.0
1815 Male, age 53, unknown 110.6
2825 Male, age 18, unknown 109.3
1816 Male, age 51, unknown 108.2
1817 Female, age 42, unknown 108.1
2407 Male, age 75, both hemispheres 106.3
2316 Male, age 76, right hemisphere 106.1
2007 Male, age 72, unknown 102.9
Red nucleus
nTPM: 112.7
1821 Female, age 72, unknown 120.3
1904 Male, age 53, unknown 119.4
1954 Female, age 42, unknown 117.4
1865 Male, age 51, unknown 116.2
2725 Female, age 75, unknown 115.1
2503 Female, age 72, unknown 113.2
2823 Male, age 76, right hemisphere 113.1
2227 Male, age 72, unknown 112.5
2769 Male, age 72, unknown 111.0
2785 Male, age 18, unknown 108.2
2584 Male, age 75, left hemisphere 107.7
2588 Male, age 74, left hemisphere 98.8
Substantia nigra
nTPM: 118.7
2241 Male, age 72, unknown 139.3
1916 Female, age 42, unknown 131.5
2699 Male, age 18, unknown 124.4
1851 Male, age 51, unknown 123.0
2409 Female, age 72, unknown 120.9
1889 Female, age 72, unknown 116.2
1941 Male, age 53, unknown 115.8
2590 Female, age 75, unknown 111.0
2583 Male, age 75, right hemisphere 104.8
2665 Male, age 74, both hemispheres 99.9
Superior colliculus
nTPM: 107.6
2587 Male, age 74, left hemisphere 117.4
1913 Female, age 42, unknown 114.2
1995 Male, age 72, unknown 110.6
2087 Female, age 72, unknown 107.9
2261 Male, age 18, unknown 107.6
1796 Male, age 53, unknown 107.2
2668 Female, age 75, unknown 104.8
2664 Male, age 75, both hemispheres 102.7
1895 Male, age 76, right hemisphere 102.0
1839 Male, age 51, unknown 101.7
Ventral tegmental area
nTPM: 119.3
2223 Female, age 72, unknown 123.6
1915 Female, age 42, unknown 121.6
2410 Female, age 72, unknown 121.4
2218 Male, age 76, both hemispheres 120.4
1942 Male, age 51, unknown 117.6
2021 Male, age 53, unknown 111.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 151.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 151.6
Samples: 139

Max nTPM: 320.2
Min nTPM: 72.5
Std nTPM: 48.5
Median nTPM: 142.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 320.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 318.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 295.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 292.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 279.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 271.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 262.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 260.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 258.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 258.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 253.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 234.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 234.2
FF:10158-103A5 76 years, female 234.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.8
Pig sample Sample description nTPM
Midbrain
nTPM: 89.8
Samples: 4

Max nTPM: 148.7
Min nTPM: 55.4
Sample A Female 148.7
Sample B Female 66.3
Sample C Male 88.7
Sample D Male 55.4
Periaqueductal gray
nTPM: 57.4
Samples: 3

Max nTPM: 63.6
Min nTPM: 49.9
Sample B Female 49.9
Sample C Male 63.6
Sample D Male 58.8
Substantia nigra
nTPM: 82.6
Samples: 4

Max nTPM: 101.9
Min nTPM: 55.2
Sample A Female 101.9
Sample B Female 55.2
Sample C Male 92.3
Sample D Male 80.8
Superior colliculi
nTPM: 73.2
Samples: 4

Max nTPM: 91.7
Min nTPM: 46.8
Sample A Female 76.1
Sample B Female 46.8
Sample C Male 91.7
Sample D Male 78.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.9
Samples: 4

Max nTPM: 157.4
Min nTPM: 123.0
Sample A Male 157.4
Sample B Male 131.4
Sample C Female 123.0
Sample D Female 147.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
385777 Antisense, RP_040625_01_E05, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.