We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SEC11C
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SEC11C
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:123.7 nTPM
HPA:123.7 nTPM
GTEx:184.2 nTPM
FANTOM5:309.5 Scaled Tags Per Million
Pig:115.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 123.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.4
1981 Female, age 72, midline 132.4
2048 Male, age 55, midline 129.3
2816 Male, age 47, midline 112.8
2565 Male, age 75, midline 110.5
2194 Female, age 79, both hemispheres 106.9
Cervical spinal cord, dorsal horn
nTPM: 123.7
2296 Male, age 66, both hemispheres 143.3
2173 Female, age 72, unknown 138.9
2069 Male, age 47, both hemispheres 127.8
1877 Male, age 55, unknown 116.6
2721 Male, age 90, both hemispheres 113.1
2297 Male, age 75, both hemispheres 102.2
Cervical spinal cord, ventral horn
nTPM: 116.0
2098 Female, age 72, unknown 141.8
2480 Male, age 75, both hemispheres 114.0
2295 Male, age 66, both hemispheres 113.9
2068 Male, age 55, unknown 112.7
2809 Male, age 90, both hemispheres 111.1
2820 Female, age 79, both hemispheres 102.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 184.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 184.2
Samples: 159

Max nTPM: 322.7
Min nTPM: 78.6
Std nTPM: 49.8
Median nTPM: 183.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 322.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 317.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 292.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 292.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 284.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 278.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 276.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 273.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 270.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 269.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 260.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 256.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 253.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 251.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 248.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 245.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 245.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 244.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 241.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 238.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 236.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 236.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 231.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 231.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 230.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 228.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 227.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 226.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 226.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 225.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 225.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 224.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 222.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 221.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 221.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 221.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 220.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 219.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 218.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 218.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 214.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 214.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 214.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 213.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 212.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 211.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 210.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 209.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 209.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 208.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 208.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 207.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 207.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 206.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 206.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 206.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 205.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 204.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 204.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 204.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 202.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 199.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 199.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 198.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 198.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 196.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 195.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 194.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 193.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 193.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 192.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 192.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 187.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 187.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 186.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 185.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 185.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 184.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 184.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 183.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 181.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 180.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 178.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 178.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 178.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 178.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 177.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 175.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 175.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 175.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 174.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 174.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 173.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 172.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 170.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 170.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 169.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 169.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 169.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 169.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 168.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 168.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 168.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 168.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 168.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 167.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 163.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 161.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 160.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 160.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 160.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 160.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 159.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 159.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 159.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 158.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 157.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 157.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 157.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 146.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 145.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 145.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 145.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 145.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 144.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 142.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 142.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 137.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 137.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 131.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 128.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 127.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 125.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 123.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 122.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 119.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 119.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 118.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 117.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 116.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 116.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 116.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 114.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 112.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 110.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 108.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 108.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 99.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 98.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 98.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 97.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 96.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 95.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 94.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 94.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 87.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 78.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 309.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 309.5
FF:10159-103A6 76 years, female 317.2
FF:10181-103D1 60 years, female 301.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 97.6
Samples: 4

Max nTPM: 117.1
Min nTPM: 83.3
Sample A Female 83.3
Sample B Female 91.7
Sample C Male 117.1
Sample D Male 98.4
Ventral spinal cord
nTPM: 115.7
Samples: 4

Max nTPM: 137.1
Min nTPM: 98.2
Sample A Female 105.8
Sample B Female 98.2
Sample C Male 121.7
Sample D Male 137.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.