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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:166.0 nTPM
HPA:166.0 nTPM
GTEx:141.6 nTPM
FANTOM5:292.8 Scaled Tags Per Million
Pig:70.1 nTPM
Mouse:217.1 nTPM
Allen mouse:22.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 166.0
Sample id Sample description nTPM
Amygdala
nTPM: 166.0
2814 Male, age 76, right hemisphere 173.2
1987 Female, age 91, left hemisphere 170.2
2695 Female, age 67, right hemisphere 166.4
2514 Male, age 75, right hemisphere 165.6
2517 Female, age 94, left hemisphere 154.6
Basal amygdala
nTPM: 149.3
2110 Male, age 80, left hemisphere 156.1
1955 Male, age 76, both hemispheres 155.8
2685 Female, age 94, left hemisphere 147.5
2243 Female, age 91, right hemisphere 147.3
2609 Male, age 75, right hemisphere 147.3
2827 Female, age 67, right hemisphere 141.7
Central amygdala
nTPM: 151.8
1905 Male, age 76, both hemispheres 160.1
2515 Male, age 75, right hemisphere 153.8
2701 Female, age 91, right hemisphere 151.9
2239 Male, age 80, left hemisphere 151.5
2826 Female, age 94, left hemisphere 141.6
Corticomedial amygdala
nTPM: 153.3
2829 Male, age 80, left hemisphere 158.8
2240 Male, age 76, both hemispheres 158.1
2429 Female, age 94, left hemisphere 156.1
2242 Female, age 91, right hemisphere 155.4
2428 Male, age 75, right hemisphere 149.0
2535 Female, age 67, right hemisphere 142.1
Lateral amygdala
nTPM: 151.7
1883 Male, age 76, both hemispheres 166.6
2516 Male, age 75, right hemisphere 158.1
2256 Male, age 80, left hemisphere 154.7
2534 Female, age 94, left hemisphere 148.7
2830 Female, age 67, right hemisphere 141.1
2255 Female, age 91, right hemisphere 140.8
Stria terminalis, bed nucleus
nTPM: 156.5
1974 Female, age 91, both hemispheres 162.1
2486 Female, age 94, both hemispheres 154.1
2201 Male, age 74, unknown 153.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 141.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 141.6
Samples: 152

Max nTPM: 567.2
Min nTPM: 68.4
Std nTPM: 76.7
Median nTPM: 120.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 567.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 548.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 494.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 417.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 396.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 346.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 329.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 264.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 248.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 228.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 217.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 217.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 213.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 212.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 210.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 207.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 204.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 195.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 192.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 188.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 182.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 178.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 174.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 160.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 157.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 155.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 149.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 149.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 148.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 146.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 146.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 145.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 145.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 143.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 143.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 142.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 142.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 142.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 141.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 141.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 141.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 140.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 140.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 138.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 138.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 137.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 137.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 136.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 133.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 133.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 132.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 132.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 131.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 130.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 130.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 130.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 129.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 129.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 126.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 126.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 125.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 125.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 125.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 125.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 124.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 123.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 122.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 122.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 121.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 120.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 120.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 120.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 120.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 120.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 119.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 119.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 118.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 118.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 117.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 116.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 116.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 115.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 114.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 114.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 113.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 112.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 112.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 112.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 112.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 112.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 111.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 111.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 111.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 110.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 110.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 110.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 109.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 109.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 108.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 108.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 107.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 107.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 107.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 106.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 106.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 105.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 105.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 104.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 104.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 103.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 103.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 103.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 102.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 101.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 101.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 101.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 100.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 100.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 99.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 99.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 97.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 97.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 97.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 96.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 95.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 95.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 95.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 91.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 91.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 89.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 88.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 86.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 76.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 75.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 72.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 68.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 292.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 292.8
FF:10151-102I7 76 years, female 292.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.1
Pig sample Sample description nTPM
Amygdala
nTPM: 70.1
Samples: 4

Max nTPM: 83.8
Min nTPM: 58.3
Sample A Female 83.8
Sample B Female 67.4
Sample C Male 58.3
Sample D Male 70.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 217.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 217.1
Samples: 4

Max nTPM: 230.6
Min nTPM: 202.0
Sample A Male 211.3
Sample B Male 202.0
Sample C Female 224.3
Sample D Female 230.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
79393537 Antisense, RP_071018_02_B03, Mouse strain C57BL/6J (56 days, male) 23.0
75042251 Antisense, RP_060412_02_C05, Mouse strain C57BL/6J (56 days, male) 21.0

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