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HSP90B1
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:188.8 nTPM
HPA:188.8 nTPM
GTEx:219.7 nTPM
FANTOM5:359.0 Scaled Tags Per Million
Pig:98.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 188.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 180.7
1981 Female, age 72, midline 196.9
2048 Male, age 55, midline 183.5
2816 Male, age 47, midline 176.2
2565 Male, age 75, midline 175.1
2194 Female, age 79, both hemispheres 172.0
Cervical spinal cord, dorsal horn
nTPM: 188.8
2296 Male, age 66, both hemispheres 222.2
2173 Female, age 72, unknown 204.1
2069 Male, age 47, both hemispheres 200.8
1877 Male, age 55, unknown 174.6
2721 Male, age 90, both hemispheres 165.9
2297 Male, age 75, both hemispheres 165.1
Cervical spinal cord, ventral horn
nTPM: 185.2
2098 Female, age 72, unknown 205.1
2809 Male, age 90, both hemispheres 198.9
2480 Male, age 75, both hemispheres 193.7
2068 Male, age 55, unknown 180.4
2295 Male, age 66, both hemispheres 169.9
2820 Female, age 79, both hemispheres 163.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 219.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 219.7
Samples: 159

Max nTPM: 660.1
Min nTPM: 120.5
Std nTPM: 92.9
Median nTPM: 196.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 660.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 647.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 589.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 564.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 463.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 452.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 449.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 446.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 437.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 425.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 417.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 374.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 358.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 355.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 332.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 323.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 314.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 301.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 284.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 281.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 280.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 259.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 258.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 252.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 250.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 249.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 249.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 249.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 247.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 245.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 244.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 242.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 241.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 239.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 236.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 234.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 234.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 233.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 229.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 228.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 226.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 225.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 224.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 222.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 221.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 220.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 220.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 220.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 220.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 219.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 219.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 218.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 217.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 216.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 216.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 215.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 214.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 213.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 213.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 213.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 213.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 213.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 212.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 211.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 211.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 210.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 208.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 208.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 208.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 207.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 205.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 204.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 203.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 202.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 200.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 198.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 197.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 197.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 197.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 196.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 195.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 194.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 194.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 193.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 193.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 191.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 191.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 190.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 190.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 190.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 187.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 187.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 184.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 183.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 183.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 183.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 182.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 181.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 180.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 179.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 178.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 178.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 177.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 176.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 176.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 176.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 175.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 174.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 174.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 174.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 173.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 173.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 172.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 171.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 170.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 169.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 169.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 168.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 168.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 167.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 167.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 167.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 167.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 165.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 163.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 163.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 163.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 163.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 160.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 159.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 158.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 158.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 158.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 157.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 157.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 154.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 154.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 154.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 150.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 149.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 148.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 148.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 147.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 146.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 144.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 142.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 142.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 141.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 140.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 139.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 138.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 137.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 136.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 136.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 132.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 129.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 122.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 120.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 359.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 359.0
FF:10159-103A6 76 years, female 364.7
FF:10181-103D1 60 years, female 353.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 98.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 98.1
Samples: 4

Max nTPM: 108.1
Min nTPM: 84.5
Sample A Female 84.5
Sample B Female 103.6
Sample C Male 108.1
Sample D Male 96.0
Ventral spinal cord
nTPM: 87.6
Samples: 4

Max nTPM: 96.1
Min nTPM: 80.2
Sample A Female 89.4
Sample B Female 80.2
Sample C Male 84.8
Sample D Male 96.1

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