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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:382.4 nTPM
HPA:382.4 nTPM
GTEx:517.2 nTPM
FANTOM5:627.4 Scaled Tags Per Million
Pig:128.4 nTPM
Mouse:412.5 nTPM
Allen mouse:18.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 382.4
Sample id Sample description nTPM
Amygdala
nTPM: 346.6
2514 Male, age 75, right hemisphere 357.1
1987 Female, age 91, left hemisphere 355.3
2517 Female, age 94, left hemisphere 343.1
2814 Male, age 76, right hemisphere 340.2
2695 Female, age 67, right hemisphere 337.3
Basal amygdala
nTPM: 345.7
2110 Male, age 80, left hemisphere 365.4
2243 Female, age 91, right hemisphere 355.4
2609 Male, age 75, right hemisphere 351.7
2685 Female, age 94, left hemisphere 351.1
1955 Male, age 76, both hemispheres 335.0
2827 Female, age 67, right hemisphere 315.9
Central amygdala
nTPM: 349.6
2701 Female, age 91, right hemisphere 369.2
2239 Male, age 80, left hemisphere 358.4
2826 Female, age 94, left hemisphere 347.4
2515 Male, age 75, right hemisphere 339.9
1905 Male, age 76, both hemispheres 332.8
Corticomedial amygdala
nTPM: 350.7
2829 Male, age 80, left hemisphere 368.9
2242 Female, age 91, right hemisphere 354.6
2429 Female, age 94, left hemisphere 352.2
2428 Male, age 75, right hemisphere 350.2
2240 Male, age 76, both hemispheres 343.1
2535 Female, age 67, right hemisphere 334.9
Lateral amygdala
nTPM: 336.5
2516 Male, age 75, right hemisphere 351.0
2534 Female, age 94, left hemisphere 350.2
2255 Female, age 91, right hemisphere 345.0
1883 Male, age 76, both hemispheres 338.6
2256 Male, age 80, left hemisphere 328.1
2830 Female, age 67, right hemisphere 305.9
Stria terminalis, bed nucleus
nTPM: 382.4
1974 Female, age 91, both hemispheres 399.6
2201 Male, age 74, unknown 381.3
2486 Female, age 94, both hemispheres 366.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 517.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 517.2
Samples: 152

Max nTPM: 1519.8
Min nTPM: 111.5
Std nTPM: 195.0
Median nTPM: 490.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1519.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1373.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1139.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1075.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 945.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 914.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 859.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 843.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 815.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 804.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 790.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 786.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 767.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 750.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 746.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 735.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 730.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 727.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 711.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 678.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 677.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 675.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 674.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 672.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 670.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 668.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 664.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 659.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 654.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 649.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 644.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 642.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 608.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 604.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 602.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 591.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 582.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 580.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 578.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 577.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 575.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 575.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 569.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 567.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 565.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 564.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 560.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 557.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 556.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 544.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 544.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 543.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 541.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 540.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 536.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 531.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 528.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 526.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 524.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 520.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 515.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 514.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 514.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 514.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 512.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 511.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 510.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 509.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 509.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 504.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 504.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 503.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 502.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 493.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 492.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 491.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 488.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 487.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 486.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 480.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 474.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 474.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 471.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 469.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 468.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 468.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 459.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 459.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 456.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 454.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 447.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 447.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 446.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 439.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 438.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 435.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 433.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 432.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 428.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 427.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 427.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 427.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 421.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 421.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 420.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 416.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 415.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 415.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 412.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 406.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 403.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 401.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 398.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 396.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 393.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 385.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 384.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 377.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 377.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 376.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 371.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 371.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 366.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 364.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 363.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 362.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 359.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 359.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 359.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 353.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 352.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 345.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 345.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 344.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 344.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 344.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 336.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 316.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 313.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 306.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 301.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 298.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 297.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 292.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 288.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 286.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 277.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 260.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 254.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 248.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 188.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 111.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 627.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 627.4
FF:10151-102I7 76 years, female 627.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.4
Pig sample Sample description nTPM
Amygdala
nTPM: 128.4
Samples: 4

Max nTPM: 198.0
Min nTPM: 100.1
Sample A Female 198.0
Sample B Female 114.6
Sample C Male 100.9
Sample D Male 100.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 412.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 412.5
Samples: 4

Max nTPM: 432.9
Min nTPM: 380.9
Sample A Male 432.9
Sample B Male 418.2
Sample C Female 380.9
Sample D Female 418.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.1
1786 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 18.1
1787 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 12.4

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