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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:364.9 nTPM
HPA:364.9 nTPM
GTEx:308.6 nTPM
FANTOM5:519.9 Scaled Tags Per Million
Pig:100.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 364.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 348.5
2194 Female, age 79, both hemispheres 366.7
1981 Female, age 72, midline 366.3
2048 Male, age 55, midline 338.5
2816 Male, age 47, midline 336.8
2565 Male, age 75, midline 334.0
Cervical spinal cord, dorsal horn
nTPM: 364.9
2297 Male, age 75, both hemispheres 375.4
2173 Female, age 72, unknown 367.8
2069 Male, age 47, both hemispheres 367.6
2296 Male, age 66, both hemispheres 362.8
2721 Male, age 90, both hemispheres 359.1
1877 Male, age 55, unknown 356.8
Cervical spinal cord, ventral horn
nTPM: 349.7
2068 Male, age 55, unknown 362.7
2820 Female, age 79, both hemispheres 352.3
2480 Male, age 75, both hemispheres 350.6
2295 Male, age 66, both hemispheres 346.5
2098 Female, age 72, unknown 344.7
2809 Male, age 90, both hemispheres 341.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 308.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 308.6
Samples: 159

Max nTPM: 542.8
Min nTPM: 143.4
Std nTPM: 65.9
Median nTPM: 302.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 542.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 529.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 495.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 464.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 454.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 449.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 434.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 428.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 427.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 418.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 414.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 407.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 407.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 402.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 399.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 389.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 387.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 384.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 379.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 375.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 374.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 374.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 369.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 367.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 362.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 361.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 360.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 359.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 358.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 358.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 357.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 355.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 355.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 355.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 353.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 353.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 351.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 349.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 348.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 347.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 344.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 343.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 341.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 340.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 340.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 339.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 337.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 336.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 335.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 333.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 332.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 331.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 331.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 330.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 329.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 328.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 327.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 327.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 322.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 321.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 320.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 320.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 319.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 318.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 318.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 318.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 317.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 316.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 313.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 312.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 311.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 309.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 309.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 309.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 307.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 306.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 306.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 306.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 304.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 302.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 301.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 301.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 300.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 300.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 298.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 298.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 295.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 295.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 295.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 294.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 293.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 293.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 292.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 291.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 291.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 289.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 287.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 287.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 283.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 283.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 282.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 282.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 282.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 280.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 279.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 276.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 276.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 275.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 275.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 275.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 273.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 273.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 272.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 272.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 271.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 270.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 270.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 270.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 266.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 265.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 264.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 264.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 263.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 263.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 263.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 262.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 257.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 255.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 253.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 253.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 250.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 250.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 249.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 249.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 246.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 244.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 237.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 235.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 235.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 227.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 226.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 225.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 224.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 221.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 220.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 219.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 219.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 217.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 217.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 216.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 215.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 214.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 214.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 213.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 199.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 196.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 193.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 183.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 143.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 519.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 519.9
FF:10181-103D1 60 years, female 835.6
FF:10159-103A6 76 years, female 204.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 94.6
Samples: 4

Max nTPM: 120.2
Min nTPM: 73.5
Sample A Female 120.2
Sample B Female 88.6
Sample C Male 73.5
Sample D Male 96.1
Ventral spinal cord
nTPM: 100.5
Samples: 4

Max nTPM: 113.8
Min nTPM: 88.8
Sample A Female 88.8
Sample B Female 110.0
Sample C Male 113.8
Sample D Male 89.4

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