MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:392.1 nTPM
HPA:392.1 nTPM
GTEx:462.6 nTPM
FANTOM5:254.4 Scaled Tags Per Million
Pig:147.6 nTPM
Mouse:401.2 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 392.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 340.0
1827 Male, age 72, unknown 362.9
1870 Female, age 42, unknown 356.3
2219 Male, age 76, both hemispheres 355.6
2411 Female, age 72, unknown 353.7
1833 Male, age 53, unknown 350.2
2666 Male, age 74, left hemisphere 334.0
1830 Male, age 51, unknown 331.7
2586 Male, age 75, left hemisphere 329.8
2828 Female, age 72, unknown 324.5
2019 Male, age 18, unknown 301.1
Dorsal raphe nucleus
nTPM: 358.2
2047 Male, age 72, unknown 378.5
2298 Female, age 72, unknown 369.2
1828 Male, age 53, unknown 359.1
2750 Male, age 76, both hemispheres 353.5
2016 Female, age 72, unknown 330.7
Inferior colliculus
nTPM: 354.3
2849 Male, age 72, unknown 371.7
1848 Female, age 42, unknown 353.6
2097 Female, age 72, unknown 351.0
1890 Male, age 53, unknown 340.9
Median raphe nucleus
nTPM: 392.1
2220 Male, age 76, midline 392.1
Pedunculopontine tegmental nucleus
nTPM: 360.0
2334 Male, age 80, both hemispheres 382.2
1921 Female, age 85, both hemispheres 362.2
2338 Male, age 61, both hemispheres 335.6
Periaquaductal grey, anterior
nTPM: 353.3
1947 Male, age 18, unknown 387.2
1795 Male, age 51, unknown 343.9
2502 Female, age 75, unknown 328.7
Periaquaductal grey, dorsal
nTPM: 354.0
1840 Male, age 53, unknown 371.5
2850 Male, age 76, both hemispheres 361.1
2464 Female, age 72, unknown 344.2
1831 Male, age 72, unknown 339.3
Periaquaductal grey, lateral
nTPM: 338.9
2140 Male, age 76, both hemispheres 346.2
2053 Male, age 18, unknown 343.5
2272 Male, age 74, both hemispheres 326.9
Pretectal area
nTPM: 343.6
2224 Female, age 72, unknown 371.2
2825 Male, age 18, unknown 370.3
2667 Female, age 75, unknown 347.3
1816 Male, age 51, unknown 346.7
1944 Female, age 72, unknown 342.4
2007 Male, age 72, unknown 338.9
1817 Female, age 42, unknown 336.6
1815 Male, age 53, unknown 335.8
2316 Male, age 76, right hemisphere 331.1
2273 Male, age 74, both hemispheres 330.8
2407 Male, age 75, both hemispheres 328.7
Red nucleus
nTPM: 329.5
1821 Female, age 72, unknown 355.3
2725 Female, age 75, unknown 352.5
1954 Female, age 42, unknown 336.7
2503 Female, age 72, unknown 333.9
2588 Male, age 74, left hemisphere 330.9
2823 Male, age 76, right hemisphere 328.9
2227 Male, age 72, unknown 328.7
2769 Male, age 72, unknown 324.9
1865 Male, age 51, unknown 323.7
1904 Male, age 53, unknown 321.1
2584 Male, age 75, left hemisphere 316.4
2785 Male, age 18, unknown 300.4
Substantia nigra
nTPM: 353.2
1916 Female, age 42, unknown 395.8
2699 Male, age 18, unknown 372.8
1851 Male, age 51, unknown 364.1
1889 Female, age 72, unknown 356.1
1941 Male, age 53, unknown 353.6
2241 Male, age 72, unknown 350.1
2590 Female, age 75, unknown 344.0
2665 Male, age 74, both hemispheres 342.4
2409 Female, age 72, unknown 330.8
2583 Male, age 75, right hemisphere 322.1
Superior colliculus
nTPM: 335.6
1895 Male, age 76, right hemisphere 355.7
1839 Male, age 51, unknown 348.4
2261 Male, age 18, unknown 344.1
1796 Male, age 53, unknown 340.1
2587 Male, age 74, left hemisphere 340.1
2668 Female, age 75, unknown 335.3
2664 Male, age 75, both hemispheres 333.1
2087 Female, age 72, unknown 329.7
1913 Female, age 42, unknown 320.8
1995 Male, age 72, unknown 308.3
Ventral tegmental area
nTPM: 361.2
1915 Female, age 42, unknown 385.7
2218 Male, age 76, both hemispheres 375.2
2410 Female, age 72, unknown 354.5
2021 Male, age 53, unknown 351.0
2223 Female, age 72, unknown 351.0
1942 Male, age 51, unknown 349.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 462.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 462.6
Samples: 139

Max nTPM: 1023.7
Min nTPM: 228.7
Std nTPM: 131.8
Median nTPM: 448.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1023.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 896.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 798.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 796.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 735.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 716.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 702.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 700.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 675.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 657.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 657.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 254.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 254.4
FF:10158-103A5 76 years, female 254.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.6
Pig sample Sample description nTPM
Midbrain
nTPM: 147.6
Samples: 4

Max nTPM: 166.7
Min nTPM: 120.3
Sample A Female 120.3
Sample B Female 138.9
Sample C Male 166.7
Sample D Male 164.4
Periaqueductal gray
nTPM: 145.8
Samples: 3

Max nTPM: 182.0
Min nTPM: 122.7
Sample B Female 132.6
Sample C Male 182.0
Sample D Male 122.7
Substantia nigra
nTPM: 138.4
Samples: 4

Max nTPM: 213.5
Min nTPM: 60.9
Sample A Female 213.5
Sample B Female 105.7
Sample C Male 173.5
Sample D Male 60.9
Superior colliculi
nTPM: 144.3
Samples: 4

Max nTPM: 183.8
Min nTPM: 96.3
Sample A Female 183.8
Sample B Female 96.3
Sample C Male 161.0
Sample D Male 136.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 401.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 401.2
Samples: 4

Max nTPM: 413.8
Min nTPM: 372.0
Sample A Male 413.8
Sample B Male 408.4
Sample C Female 372.0
Sample D Female 410.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
1786 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 12.0
1787 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 11.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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